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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00051924-protein ID=TCONS_00051924-protein|Name=TCONS_00051924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp MEQGQTNSDLISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQ SKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDG GIARECAKHPKVKSVTQCEIDGDVVALSKKYLPSMASGFDSPKMNLNIGD GFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSV QGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNA HTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKILAGTNHEE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003824 |
catalytic activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | GENE3D | 2.30.140.10 | | coord: 1..68 e-value: 4.4E-27 score: 93.7 |
None | No IPR available | PFAM | PF17284 | Spermine_synt_N | coord: 14..68 e-value: 6.0E-19 score: 67.6 |
None | No IPR available | PFAM | PF01564 | Spermine_synth | coord: 73..255 e-value: 2.8E-61 score: 206.1 |
None | No IPR available | GENE3D | 3.40.50.150 | | coord: 69..296 e-value: 3.8E-42 score: 143.9 |
None | No IPR available | CDD | cd02440 | AdoMet_MTases | coord: 107..201 e-value: 6.04122E-4 score: 36.2539 |
IPR001045 | Spermidine/spermine synthases | TIGRFAM | TIGR00417 | TIGR00417 | coord: 15..287 e-value: 1.1E-99 score: 331.1 |
IPR001045 | Spermidine/spermine synthases | HAMAP | MF_00198 | Spermidine_synth | coord: 14..294 score: 33.673 |
IPR030373 | Polyamine biosynthesis domain, conserved site | PROSITE | PS01330 | PABS_1 | coord: 92..105 |
IPR030374 | Polyamine biosynthesis domain | PROSITE | PS51006 | PABS_2 | coord: 13..248 score: 91.669 |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase | SUPERFAMILY | 53335 | S-adenosyl-L-methionine-dependent methyltransferases | coord: 12..293 |
Blast
BLAST of TCONS_00051924-protein vs. Swiss-Prot (Human)
Match: SPEE (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1) HSP 1 Score: 354.755 bits (909), Expect = 2.449e-123 Identity = 160/283 (56.54%), Postives = 210/283 (74.20%), Query Frame = 0 Query: 11 ISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQSKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDGGIARECAKHPKVKSVTQCEIDGDVVALSKKYLPSMASGFDSPKMNLNIGDGFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSVQGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNAHTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKIL 293
I GWF E W GQA SL+VE++L ++S +QDI+VF+SK +GNVLVLDGVIQCTE DE+ YQEM+A L L SHPNP KVLIIGGGDGG+ RE KHP V+SV QCEID DV+ +SKK+LP MA G+ S K+ L++GDGF FM+++Q+ FDV+I+D+SDP+GPAE LF E+YY+L+ ALKEDG+L QGEC +LH +LI+ + FC LF AYA +PTYP GQIG++L SKN TNF++P + + ++ +YY+ ++H AFVLP +K L
Sbjct: 16 IREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 298
The following BLAST results are available for this feature:
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