TCONS_00051924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051924
Unique NameTCONS_00051924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051924 ID=TCONS_00051924|Name=TCONS_00051924|organism=Clytia hemisphaerica|type=transcript|length=1599bp
ctaactttcatcatcaggtaggtccattcagcatctagcttgtttttcct
gtcttcactttgatccatgtcaacggggtcatgcatttgctgttttgcat
gCTCGTTTctaacacgttacttttcgctgggccttcacgcccaacgggct
tcttgttttgaaataaaaaagtcaacAATAAAGATCTGAAACTTCTACCT
TCAGGTTTTAAACTACTCTCTCAGTAATTTTTTATCTCAATATTATAGGG
CTAATAGAGTTTTGAGAACATGGAACAAGGACAAACTAATTCAGACTTAA
TTTCAAATGGATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCG
TTTTCTTTAGAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCA
AGATATTATGGTGTTTCAAAGTAAGAATCATGGCAACGTTCTTGTCTTGG
ATGGTGTTATTCAATGTACGGAATTTGATGAATATTGTTATCAAGAAATG
TTGGCTTATCTTGCTCTAAACTCACATCCTAACCCAGAGAAGgtGTTGAT
AATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCTAAACATCCAA
AAGTCAAATCAGTCACACAATGTGAAATTGATGGTGATGTTGTTGCCTTG
AGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATTCAcctaaaat
gaatttgaatattGGTGATGGGTTTGCTTTCAtggaaaaacatcaaaatg
aatTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGGACCTGCTGAG
AGACTTTTCTCAGAGAATTATTACAAGTTAGTATATGCTGCCTTAAAAGA
AGATGGTATCCTCTCAGTTCAAGGCGAATGTATGTTTTTACATGCAAATT
TAATCAGAAATTTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGCC
TATGCTACAAGTTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTATGT
TCTTGCAAGTAAGAATGCtCACACAAACTTTAAGAAGCCTGCTATAGTGt
tcaatgaagatgaaaaagagaAGATTGGTTTCAGATATTACGACGAAGAG
ATCCACGAGAATGCTTTCGTTCTACCAAGAGCTTTTAAAAAGaTTTTAGC
TGGAACAAATCACGAAGAGTAATATTTGAAGGAGCGGACTAATGAGGACT
GGTCAGTTGGTAAGAATGCAATTAGTAAAACTTCAAGATAGTTATCAGAT
AAAAAAGAGAATCGTAGTATCTGGAACCATACAATCCATAAGGAGGAGCT
GATCAGGGATCACAGCGATCTTTGTTAAAACAATGAATTTTTGGACTTAA
AAACCATGTTTTCCAGGCtttgaagagattttttttataaaacttatTGA
TTCCTGtagtattttgaaatttattcaaCCGCCTATTTTAAGTAGTACAT
TTCAGTTAGGCAACTTTTACAAATAAATCTATTTATTTTGGATAATCAAA
TTTGATATTATAGTTTagtattttgaaattgaaataaatttcaGTGCTTT
TACTgaagattttacttttaaattgCCTTGTTTTTGAGCTGGATAGTCA
Run BLAST on NCBI

protein sequence of TCONS_00051924-protein

>TCONS_00051924-protein ID=TCONS_00051924-protein|Name=TCONS_00051924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MEQGQTNSDLISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQ
SKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDG
GIARECAKHPKVKSVTQCEIDGDVVALSKKYLPSMASGFDSPKMNLNIGD
GFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSV
QGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNA
HTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKILAGTNHEE
Run BLAST on NCBI

transcript from alignment at scaffold_206:204785..209307-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051924 ID=TCONS_00051924|Name=TCONS_00051924|organism=Clytia hemisphaerica|type=transcript|length=4523bp|location=Sequence derived from alignment at scaffold_206:204785..209307- (Clytia hemisphaerica)
CTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTTCCT
GTCTTCACTTTGATCCATGTCAACGGGGTCATGCATTTGCTGTTTTGCAT
GCTCGTTTCTAACACGTTACTTTTCGCTGGGCCTTCACGCCCAACGGGCT
TCTTGTTTTGAAATAAAAAAGTCAACAATAAAGATCTGAAACTTCTACCT
TCAGGTTTTAAACTACTCTCTCAGTAATTTTTTATCTCAATATTATAGGG
CTAATAGAGTTTTGAGAACATGGAACAAGGACAAACTAATTCAGACTTAA
TTTCAAATGGATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCG
TTTTCTTTAGAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCA
AGATATTATGGTGTTTCAAAGGTAACCGAAGTAATTAAAATTTCCACATT
TCTTTTTCAATCAATTTCAATGAATCCCGACCTAATTTTATCTGTTTTTT
CTCATTTTTTTAGCAAATAATGATTACGCTAAATAGAAATTTCCCAATAC
TGCTAAGTACTGATGTGTTTTTAATGGGTTGTATATATCATTGTATATAT
CTAGTCCTGGGGCTTTTTGGCTTGAAAAGGTTAAAAATGAAACAGCTGAA
TAATCACGACCTGAAATTTAATGTAAAAGTATTCAATTATTGAAAGTATA
ATTCCTATATTTCGTTTTGTACTTTCAACTGCTTTCCATGTACTAAAAAC
TTTTTATTCCGATTAGTAAGAATCATGGCAACGTTCTTGTCTTGGATGGT
GTTATTCAATGTACGGAATTTGATGAATATTGTTATCAAGAAATGTTGGC
TTATCTTGCTCTAAACTCACATCCTAACCCAGAGAAGGTAAATGATTGGA
AGTAGATTCTTTGTTTCATTAATCATTTATTTGTACTGATAGATTTCTGA
CTAGATCTTTTTGATTTGGCAAGTGCATCAATTAAAGAAATCTGGAAAAT
GTATATTTTACTGTATATATCGTTTTTCATTTAAAAAATTGTGGTTCTCA
AATTGAAAGCACTTTGTCCAAACAGTTTTTTTTATGTAGGATGCAGAAAA
CTTTGTTATAAATATTTTTCAGGTGTTGATAATTGGTGGAGGTGATGGTG
GTATTGCAAGGGAATGCGCTAAACATCCAAAAGTCAAATCAGTCACACAA
TGTGAAATTGATGGTGTAAGGAGAATGATATACAAATAGAGTCTCCATAA
CTCGATTACACATACAACACCAGGAATTGAAATTTGTTTGAGTTATGTAA
AATGCAAGTTATAGAGACTTGTTTATATGGGGTTCTTACTGAAGTGACTG
ATAGAAACCTTAATGTAGTATTGCATTGTTTATATTATCTTTTCAATGTA
ATCAAAACAAATGACTTAGTATCGGGCTGAATGCAGTTTACTTTCATCGG
TTCTATCTCAACCCTGGTTATCTTCAACTTTTCTTCTCCTCTCAAAAGGA
TTCGAAAGCAAAGCTCAAACTTTCTCTTAACCCTTTTTTCATCTCACACA
CAACATCTTACCAAGAACCTAATTTCTGTTTTATTTGATAGGATGTTGTT
GCCTTGAGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATTCACC
TAAAATGAATTTGAATATTGGTGATGGGTTTGCTTTCATGGAAAAACATC
AAAATGAATTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGGTATG
TTTGCTTCACCTTGAAGGAATAAATTTGCATGGTTTACTGTTATATTTTT
AAAATTTTCAATATAGAATCACTGTCAGTATAAGAAACAAAGAGTTTTTT
GCAATGTCTCTAGGGGGAATCCAAGAAGATTTTTCAGGGGGTCTAAAGGA
GTAGCTTTCATTATAGGGTGTGAAAAGTTATTCTAAAATTTTTAGGGGAA
TGACACACTGATCTAAATTCGTCCACCCTCACTTTAATAAGGTATGAAGG
AATTTATCCAAGGGTTCTTTTGCTAATTTTACTATTTTCCAGTGGGAAAA
TATACATTTCTAAGAATCTTTTTTGCTTTAAAAGATTCGCCCTTTTTTCG
GTTTCGTTCGTTCGTTTTAAAAGTAAGCAAAGGATTCATAGGTTGTTCTC
CTCTATTTTTTTGTAGGACCTGCTGAGAGACTTTTCTCAGAGAATTATTA
CAAGTTAGTATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAAG
GTATTTATAATGTTGGAAATACTGTCTTTAAAAACGAGTTTTTTTTCTGA
TATGAATCAAGAGCTGAGCAAAATTATAACATGTTTCAAACATCTTATAA
TACAACAGTGACATTTCAATAAAACTTTCTTCTTTATTGAGACGGGGATC
TTACACCTAGCAGATATTATTTATCCCTATCCTTGTGGATAGGGGTAATA
AACTTTTTCGCCTGAGAATCTTCATTCAATTACTTTAAAAAATCTTCATA
TTCAGACTTCTAAATTTAATGATATTATCATTATAGGGTATCTTTTAATA
ACCTAAGAAATTTCCAATATTTCAGGCGAATGTATGTTTTTACATGCAAA
TTTAATCAGAAATTTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAG
CCTATGCTACAAGTTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTAT
GTTCTTGCAAGTAAGAATGCTGTAAGTTTTATTTATTTTAATCTTTAACC
GTTTTTAATGGCCAAAAAATCCTTATTGCCAATATAGTACTACTAACATG
GAAGTGGCTTTTGGTAACTTTTACATTATGAGAACCGAGACTGATCAAGC
TTAAGTTATTTCCCTATCCTTAGTCCGGTAACGGTCTTTAAATGTTGATT
GAACTACGATACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAGTGAC
GTCAAACACTCCATCGTTTTGCCACTGATAATGGTCTTCTTCGTTCCAGA
CATTCGCGTGTGTTCCACTACGGATTTTCTTCATATTTCGATTTTTAAAA
GCCTACTCGGTGCAAAAGAGAAATCGTGTATTTTCTAATACGCCGTTCAT
TAACTCAAATCAAATGACTTTGGAGGTTCGGTGAAATAGTTGCCGAATTG
TCGTCCCAGGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGGCGGTATG
TCGGGAGAAAAAGAATCATCATTGTTTCGAATATGAAAATACTTGACGCA
AATTTACCTTGCCCTAATAATAAAATGTAAACTCTACATACTTTCAGCAC
ACAAACTTTAAGAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGAA
GATTGGTTTCAGATATTACGACGAAGAGATCCACGAGAATGCTTTCGTTC
TACCAAGAGCTTTTAAAAAGGTACGCAATCCATTTATTTATTGTTGTTAG
ACCAGAATTGGAAACATTCGGCATAAATACTTCAAATCTAAATATCTATA
AAATTAAGATTTTTATCAGTTTAGAGAAAGTAGACCCCCAATTAAAAAAG
GAAACTTGTCTAGAGTACAAGTTTAAAGCTGTTTGGAGTTGAGACACTAT
TTTATTGGTGAACTTTCAAATGATATTTTAATATTTTTTATATTAATATT
TTAAAAAGTTATCTTCCATTTAAAAAAACTAAGTAAAATACATTACTCTG
AGTTTCGTGTTTTCACACTAATCATATGTACAGTAATGATTGAAAAATCT
GAAATTCGACGTAAAAAGTTAAAAAAACTGGATAATTGGTGCAATAAAAC
TAGGTAATAAAAACAATGATGAAAGCATTAAAAAGTATTGAAAATAAAAT
TTATGATTTGTCCGGATTTCAGATTTTTCAATCATTACTGTACATATGAT
TAGTGTGAAAACACGAAACTCAGAGTAATGTACTTTACTTAGTTTTTTTT
TTAAATGGAAGATAACTTTTAAAAACATTGATACATGGCTCTGGTTTTTT
GAACTGATCGAGCACTCTCTGACATTGATTTGCCACATTTGTTTTAATAT
TTTTTATATTATTTAGATTTTAGCTGGAACAAATCACGAAGAGTAATATT
TGAAGGAGCGGACTAATGAGGACTGGTCAGTTGGTAAGAATGCAATTAGT
AAAACTTCAAGATAGTTATCAGATAAAAAAGAGAATCGTAGTATCTGGAA
CCATACAATCCATAAGGAGGAGCTGATCAGGGATCACAGCGATCTTTGTT
AAAACAATGAATTTTTGGACTTAAAAACCATGTTTTCCAGGCTTTGAAGA
GATTTTTTTTATAAAACTTATTGATTCCTGTAGTATTTTGAAATTTATTC
AACCGCCTATTTTAAGTAGTACATTTCAGTTAGGCAACTTTTACAAATAA
ATCTATTTATTTTGGATAATCAAATTTGATATTATAGTTTAGTATTTTGA
AATTGAAATAAATTTCAGTGCTTTTACTGAAGATTTTACTTTTAAATTGC
CTTGTTTTTGAGCTGGATAGTCA

Coding sequence (CDS) from alignment at scaffold_206:204785..209307-

>TCONS_00051924 ID=TCONS_00051924|Name=TCONS_00051924|organism=Clytia hemisphaerica|type=CDS|length=7224bp|location=Sequence derived from alignment at scaffold_206:204785..209307- (Clytia hemisphaerica)
ATTTTAGCTGGAACAAATCACGAAGAGTAACACACAAACTTTAAGAAGCC
TGCTATAGTGTTCAATGAAGATGAAAAAGAGAAGATTGGTTTCAGATATT
ACGACGAAGAGATCCACGAGAATGCTTTCGTTCTACCAAGAGCTTTTAAA
AAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGAAATTTGTTGGAC
TTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTACAAGTTATGTCCC
TACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAAGTAAGAATGCTG
ACCTGCTGAGAGACTTTTCTCAGAGAATTATTACAAGTTAGTATATGCTG
CCTTAAAAGAAGATGGTATCCTCTCAGTTCAAGGATGTTGTTGCCTTGAG
TAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATTCACCTAAAATGA
ATTTGAATATTGGTGATGGGTTTGCTTTCATGGAAAAACATCAAAATGAA
TTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGGTGTTGATAATTG
GTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCTAAACATCCAAAAGTC
AAATCAGTCACACAATGTGAAATTGATGGTTAAGAATCATGGCAACGTTC
TTGTCTTGGATGGTGTTATTCAATGTACGGAATTTGATGAATATTGTTAT
CAAGAAATGTTGGCTTATCTTGCTCTAAACTCACATCCTAACCCAGAGAA
GATGGAACAAGGACAAACTAATTCAGACTTAATTTCAAATGGATGGTTCA
TGGAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCTTTAGAAGTTGAA
AAAGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATATTATGGTGTTTCA
AAGATTTTAGCTGGAACAAATCACGAAGAGTAACACACAAACTTTAAGAA
GCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGAAGATTGGTTTCAGAT
ATTACGACGAAGAGATCCACGAGAATGCTTTCGTTCTACCAAGAGCTTTT
AAAAAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGAAATTTGTTG
GACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTACAAGTTATGT
CCCTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAAGTAAGAATG
CTGACCTGCTGAGAGACTTTTCTCAGAGAATTATTACAAGTTAGTATATG
CTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAAGGATGTTGTTGCCTT
GAGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATTCACCTAAAA
TGAATTTGAATATTGGTGATGGGTTTGCTTTCATGGAAAAACATCAAAAT
GAATTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGGTGTTGATAA
TTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCTAAACATCCAAAA
GTCAAATCAGTCACACAATGTGAAATTGATGGTTAAGAATCATGGCAACG
TTCTTGTCTTGGATGGTGTTATTCAATGTACGGAATTTGATGAATATTGT
TATCAAGAAATGTTGGCTTATCTTGCTCTAAACTCACATCCTAACCCAGA
GAAGATGGAACAAGGACAAACTAATTCAGACTTAATTTCAAATGGATGGT
TCATGGAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCTTTAGAAGTT
GAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATATTATGGTGTT
TCAAAGATTTTAGCTGGAACAAATCACGAAGAGTAACACACAAACTTTAA
GAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGAAGATTGGTTTCA
GATATTACGACGAAGAGATCCACGAGAATGCTTTCGTTCTACCAAGAGCT
TTTAAAAAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGAAATTTG
TTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTACAAGTTA
TGTCCCTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAAGTAAGA
ATGCTGACCTGCTGAGAGACTTTTCTCAGAGAATTATTACAAGTTAGTAT
ATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAAGGATGTTGTTGC
CTTGAGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATTCACCTA
AAATGAATTTGAATATTGGTGATGGGTTTGCTTTCATGGAAAAACATCAA
AATGAATTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGGTGTTGA
TAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCTAAACATCCA
AAAGTCAAATCAGTCACACAATGTGAAATTGATGGTTAAGAATCATGGCA
ACGTTCTTGTCTTGGATGGTGTTATTCAATGTACGGAATTTGATGAATAT
TGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAACTCACATCCTAACCC
AGAGAAGATGGAACAAGGACAAACTAATTCAGACTTAATTTCAAATGGAT
GGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCTTTAGAA
GTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATATTATGGT
GTTTCAAAGATTTTAGCTGGAACAAATCACGAAGAGTAACACACAAACTT
TAAGAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGAAGATTGGTT
TCAGATATTACGACGAAGAGATCCACGAGAATGCTTTCGTTCTACCAAGA
GCTTTTAAAAAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGAAAT
TTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTACAAG
TTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAAGTA
AGAATGCTGACCTGCTGAGAGACTTTTCTCAGAGAATTATTACAAGTTAG
TATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAAGGATGTTGT
TGCCTTGAGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATTCAC
CTAAAATGAATTTGAATATTGGTGATGGGTTTGCTTTCATGGAAAAACAT
CAAAATGAATTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGGTGT
TGATAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCTAAACAT
CCAAAAGTCAAATCAGTCACACAATGTGAAATTGATGGTTAAGAATCATG
GCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACGGAATTTGATGAA
TATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAACTCACATCCTAA
CCCAGAGAAGATGGAACAAGGACAAACTAATTCAGACTTAATTTCAAATG
GATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCTTTA
GAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATATTAT
GGTGTTTCAAAGATTTTAGCTGGAACAAATCACGAAGAGTAACACACAAA
CTTTAAGAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGAAGATTG
GTTTCAGATATTACGACGAAGAGATCCACGAGAATGCTTTCGTTCTACCA
AGAGCTTTTAAAAAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGA
AATTTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTAC
AAGTTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAA
GTAAGAATGCTGACCTGCTGAGAGACTTTTCTCAGAGAATTATTACAAGT
TAGTATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAAGGATGT
TGTTGCCTTGAGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTGATT
CACCTAAAATGAATTTGAATATTGGTGATGGGTTTGCTTTCATGGAAAAA
CATCAAAATGAATTTGACGTAGTCATTTCAGATACAAGTGACCCTGTTGG
TGTTGATAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCTAAA
CATCCAAAAGTCAAATCAGTCACACAATGTGAAATTGATGGTTAAGAATC
ATGGCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACGGAATTTGAT
GAATATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAACTCACATCC
TAACCCAGAGAAGATGGAACAAGGACAAACTAATTCAGACTTAATTTCAA
ATGGATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCT
TTAGAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATAT
TATGGTGTTTCAAAGATTTTAGCTGGAACAAATCACGAAGAGTAACACAC
AAACTTTAAGAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGAAGA
TTGGTTTCAGATATTACGACGAAGAGATCCACGAGAATGCTTTCGTTCTA
CCAAGAGCTTTTAAAAAGGCGAATGTATGTTTTTACATGCAAATTTAATC
AGAAATTTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGC
TACAAGTTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTG
CAAGTAAGAATGCTGACCTGCTGAGAGACTTTTCTCAGAGAATTATTACA
AGTTAGTATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAAGGA
TGTTGTTGCCTTGAGTAAGAAATATTTACCTTCCATGGCAAGTGGTTTTG
ATTCACCTAAAATGAATTTGAATATTGGTGATGGGTTTGCTTTCATGGAA
AAACATCAAAATGAATTTGACGTAGTCATTTCAGATACAAGTGACCCTGT
TGGTGTTGATAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCT
AAACATCCAAAAGTCAAATCAGTCACACAATGTGAAATTGATGGTTAAGA
ATCATGGCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACGGAATTT
GATGAATATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAACTCACA
TCCTAACCCAGAGAAGATGGAACAAGGACAAACTAATTCAGACTTAATTT
CAAATGGATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCGTTT
TCTTTAGAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCAAGA
TATTATGGTGTTTCAAAGATTTTAGCTGGAACAAATCACGAAGAGTAACA
CACAAACTTTAAGAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAGAGA
AGATTGGTTTCAGATATTACGACGAAGAGATCCACGAGAATGCTTTCGTT
CTACCAAGAGCTTTTAAAAAGGCGAATGTATGTTTTTACATGCAAATTTA
ATCAGAAATTTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTA
TGCTACAAGTTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTATGTTC
TTGCAAGTAAGAATGCTGACCTGCTGAGAGACTTTTCTCAGAGAATTATT
ACAAGTTAGTATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTTCAA
GGATGTTGTTGCCTTGAGTAAGAAATATTTACCTTCCATGGCAAGTGGTT
TTGATTCACCTAAAATGAATTTGAATATTGGTGATGGGTTTGCTTTCATG
GAAAAACATCAAAATGAATTTGACGTAGTCATTTCAGATACAAGTGACCC
TGTTGGTGTTGATAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGC
GCTAAACATCCAAAAGTCAAATCAGTCACACAATGTGAAATTGATGGTTA
AGAATCATGGCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACGGAA
TTTGATGAATATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAACTC
ACATCCTAACCCAGAGAAGATGGAACAAGGACAAACTAATTCAGACTTAA
TTTCAAATGGATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAAGCG
TTTTCTTTAGAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATTTCA
AGATATTATGGTGTTTCAAAGATTTTAGCTGGAACAAATCACGAAGAGTA
ACACACAAACTTTAAGAAGCCTGCTATAGTGTTCAATGAAGATGAAAAAG
AGAAGATTGGTTTCAGATATTACGACGAAGAGATCCACGAGAATGCTTTC
GTTCTACCAAGAGCTTTTAAAAAGGCGAATGTATGTTTTTACATGCAAAT
TTAATCAGAAATTTGTTGGACTTTTGTAATGGTTTATTTGCAAAAGCAGC
CTATGCTACAAGTTATGTCCCTACCTACCCGTGTGGTCAGATTGGGTATG
TTCTTGCAAGTAAGAATGCTGACCTGCTGAGAGACTTTTCTCAGAGAATT
ATTACAAGTTAGTATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTT
CAAGGATGTTGTTGCCTTGAGTAAGAAATATTTACCTTCCATGGCAAGTG
GTTTTGATTCACCTAAAATGAATTTGAATATTGGTGATGGGTTTGCTTTC
ATGGAAAAACATCAAAATGAATTTGACGTAGTCATTTCAGATACAAGTGA
CCCTGTTGGTGTTGATAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAA
TGCGCTAAACATCCAAAAGTCAAATCAGTCACACAATGTGAAATTGATGG
TTAAGAATCATGGCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACG
GAATTTGATGAATATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAA
CTCACATCCTAACCCAGAGAAGATGGAACAAGGACAAACTAATTCAGACT
TAATTTCAAATGGATGGTTCATGGAAAAAAATAAGCAATGGTCTGGACAA
GCGTTTTCTTTAGAAGTTGAAAAAGTTCTTGAGGTGAAACAGTCAGAATT
TCAAGATATTATGGTGTTTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032859XLOC_032859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051924-exon-scaffold_206-1575043694:208887..209307TCONS_00051924-exon-scaffold_206-1575043694:208887..209307Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:208421..208541TCONS_00051924-exon-scaffold_206-1575043694:208421..208541Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:208093..208185TCONS_00051924-exon-scaffold_206-1575043694:208093..208185Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:207563..207716TCONS_00051924-exon-scaffold_206-1575043694:207563..207716Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:207058..207141TCONS_00051924-exon-scaffold_206-1575043694:207058..207141Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:206587..206732TCONS_00051924-exon-scaffold_206-1575043694:206587..206732Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:205888..206010TCONS_00051924-exon-scaffold_206-1575043694:205888..206010Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1575043694:204785..205241TCONS_00051924-exon-scaffold_206-1575043694:204785..205241Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:208887..209307TCONS_00051924-exon-scaffold_206-1510915933:208887..209307Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:208421..208541TCONS_00051924-exon-scaffold_206-1510915933:208421..208541Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:208093..208185TCONS_00051924-exon-scaffold_206-1510915933:208093..208185Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:207563..207716TCONS_00051924-exon-scaffold_206-1510915933:207563..207716Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:207058..207141TCONS_00051924-exon-scaffold_206-1510915933:207058..207141Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:206587..206732TCONS_00051924-exon-scaffold_206-1510915933:206587..206732Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:205888..206010TCONS_00051924-exon-scaffold_206-1510915933:205888..206010Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1510915933:204785..205241TCONS_00051924-exon-scaffold_206-1510915933:204785..205241Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:208887..209307TCONS_00051924-exon-scaffold_206-1491911889:208887..209307Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:208421..208541TCONS_00051924-exon-scaffold_206-1491911889:208421..208541Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:208093..208185TCONS_00051924-exon-scaffold_206-1491911889:208093..208185Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:207563..207716TCONS_00051924-exon-scaffold_206-1491911889:207563..207716Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:207058..207141TCONS_00051924-exon-scaffold_206-1491911889:207058..207141Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:206587..206732TCONS_00051924-exon-scaffold_206-1491911889:206587..206732Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:205888..206010TCONS_00051924-exon-scaffold_206-1491911889:205888..206010Clytia hemisphaericaexon
TCONS_00051924-exon-scaffold_206-1491911889:204785..205241TCONS_00051924-exon-scaffold_206-1491911889:204785..205241Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051924-proteinTCONS_00051924-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:204785..209307 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9951	12.8189	6.31432	5.58524	5.68435	5.35164	10.0918	13.2269	4.92551	6.87235	3.79783	3.37959	3.23592	3.82308	5.36465	8.5321	10.6109	7.24925	3.6777	3.23106	7.39772	6.27562	13.1292	10.5304	9.32996	13.0728	11.686	6.15046	9.55116	7.83906
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001045Spermi_synthase
IPR030373PABS_CS
IPR030374PABS
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00051924 vs. Swiss-Prot (Human)
Match: SPEE (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 8.500e-118
Identity = 160/283 (56.54%), Postives = 210/283 (74.20%), Query Frame = 3 
Query:  300 ISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQSKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDGGIARECAKHPKVKSVTQCEIDGDVVALSKKYLPSMASGFDSPKMNLNIGDGFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSVQGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNAHTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKIL 1148
            I  GWF E    W GQA SL+VE++L  ++S +QDI+VF+SK +GNVLVLDGVIQCTE DE+ YQEM+A L L SHPNP KVLIIGGGDGG+ RE  KHP V+SV QCEID DV+ +SKK+LP MA G+ S K+ L++GDGF FM+++Q+ FDV+I+D+SDP+GPAE LF E+YY+L+  ALKEDG+L  QGEC +LH +LI+ +  FC  LF   AYA   +PTYP GQIG++L SKN  TNF++P     + +  ++  +YY+ ++H  AFVLP   +K L
Sbjct:   16 IREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 298
The following BLAST results are available for this feature:
BLAST of TCONS_00051924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPEE8.500e-11856.54Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV... [more]
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