TCONS_00052050-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052050-protein
Unique NameTCONS_00052050-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052050-protein ID=TCONS_00052050-protein|Name=TCONS_00052050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
FRKRTIKMSQNENKIMMENLPIGSMKSDIENVLKGWVNEITISKIDLVDN
KKRKCKTAYVTLSCYSQVQQIIDFYSTNFDDQGFAFEDGFANIGMVRVKK
YIGKAKPKNENDLNIKPLQNEENASNQDTERLFCPTEEDWDTETFDNENT
QNIAEDSKYDENSSSQTLMFQQLPNRTTKSEVKELINQLQPETKIAHIDL
KINTLHKQKLNAYVRFASQSDCNAIMNIFQEKYGEKGYWFVNQGNKSSTL
KLMFYHGKKKETKQKVETRQEPNPEKKVEEFHVYLEKVPPQTTNEEITSI
LNKWLPPIFTVSKVVYHKDDKLFHVKLPSWEACDLLLSHFRVNFQPHGGF
AFQNAKGRFNLIDVKRNESFYSKSTKQKLTLQNDASNNLELLKCSSVSSC
NELHAELICPSPPSVSSSNDWKSVDINLQAEEISHNSVSSSSQPSRISGS
LDPFLPTNSKENITNHLLQQEIDQTEIVLEENVSGELNTLMYEKEELDDF
RKEIMLLEDELKTKCPELFVSEVDMMLLRLDLNKMETKKNELLIMKNKAQ
SELDELREQISCLNEGDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032960XLOC_032960Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052050TCONS_00052050Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 532..566
NoneNo IPR availableCOILSCoilCoilcoord: 490..510
NoneNo IPR availableGENE3D3.30.70.330coord: 150..262
e-value: 2.5E-7
score: 30.2
NoneNo IPR availableGENE3D3.30.70.330coord: 2..112
e-value: 0.089
score: 12.3
NoneNo IPR availableGENE3D3.30.70.330coord: 263..378
e-value: 0.0029
score: 17.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..128
NoneNo IPR availableCDDcd00590RRM_SFcoord: 173..242
e-value: 0.0085502
score: 33.8177
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 160..245

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052050-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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