TCONS_00052066-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052066-protein
Unique NameTCONS_00052066-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052066-protein ID=TCONS_00052066-protein|Name=TCONS_00052066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MSKMSEEQNEQQKTLYHQKAHNIEAETPMPLSDNLEVDKRVTANGSKKQP
LYHQNSFEDGGSTASDILHLYGKKNTARVKLSISYSEGGTRSYLEQPPSI
EDCLETNDDFRFQSRTCKCLPKRYVLALLSFFGFFNVYCLRVDLSVTLVA
MTSNHTRVRADGTEYTALAEFQWNRELQGHLLAAFYYGYIITQIPGGYIA
ARFGGKNLFGFAILISGFLTLLTPLAAKEHWVLLFVLRLVEGLCEGCIYP
AMYSIWSRWAPPMERAALVTIPHSGSYAGSVAGTLLAGYLCEVCGWSWVF
YFFGILALIWVVVWQILASDSPEDDNHISNVERRMILESLESEHTSQKLS
DDLPWFSIFTSLPFISIAVAHTCEGWAFGLIQTSFPKYLSEALNYRIFKS
GQYTSLIYFLMGFSTFVSGQLSSCLRRRGVSATVLRKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032975XLOC_032975Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052066TCONS_00052066Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 349..435
e-value: 8.7E-9
score: 34.4
NoneNo IPR availableGENE3D1.20.1250.20coord: 114..328
e-value: 4.8E-32
score: 110.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 128..426
e-value: 4.6E-43
score: 147.4
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 122..438
score: 20.374
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 128..434
e-value: 5.57811E-33
score: 126.274
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 117..430

Blast
[Close]
BLAST of TCONS_00052066-protein vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 8.642e-82
Identity = 140/335 (41.79%), Postives = 203/335 (60.60%), Query Frame = 0 
Query:  119 CLPKRYVLALLSFFGFFNVYCLRVDLSVTLVAMTSNHTRVRADGT-----EYTAL---------AEFQWNRELQGHLLAAFYYGYIITQIPGGYIAARFGGKNLFGFAILISGFLTLLTPLAAKEHWVLLFVLRLVEGLCEGCIYPAMYSIWSRWAPPMERAALVTIPHSGSYAGSVAGTLLAGYLCEVCGWSWVFYFFGILALIWVVVWQILASDSPEDDNHISNVERRMILESLESEHTSQKLSDDLPWFSIFTSLPFISIAVAHTCEGWAFGLIQTSFPKYLSEALNYRIFKSGQYTSLIYFLMGFSTFVSGQLSSCLRRR-GVSATVLRKV 438
            C   RY LA+L+FFGFF VY LRV+LSV LV M  ++T +  + T     E++A           ++QW+ E QG +L +F+YGYIITQIPGGY+A++ GGK L GF IL +  LTL TP+AA      L VLR +EGL EG  +PAM+++WS WAPP+ER+ L++I ++G+  G+V    L+G +C    W++VFYFFG + + W ++W  L SD+P+    IS+ E+  IL SL ++ +SQK    +PW  I  SLP  +I VAH    W F  + T  P Y+ E L + + ++G  +SL Y        +SGQ +  LR +   S   +R++
Sbjct:   35 CCSARYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQK---SVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVRRI 366
The following BLAST results are available for this feature:
BLAST of TCONS_00052066-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A58.642e-8241.79Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
back to top