TCONS_00052101-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052101-protein
Unique NameTCONS_00052101-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length137

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052101-protein ID=TCONS_00052101-protein|Name=TCONS_00052101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MIQYILLFSRQGKLRLQKWYHAIPLKDKKKITRDLTTMILSRKPKMCSFL
EYKDLKVVYKRYASLFFCVAIERGDNELLSLEIIHRYVEILDKYFGNVSR
CFYTKASCSLMLYILCRFTYRLIVKINCLANYFFLIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032992XLOC_032992Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052101TCONS_00052101Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..99
e-value: 1.3E-37
score: 128.8
NoneNo IPR availableGENE3D3.30.450.60coord: 1..116
e-value: 9.2E-33
score: 112.6
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 1..100

Blast
[Close]
BLAST of TCONS_00052101-protein vs. Swiss-Prot (Human)
Match: AP1S2 (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.624e-49
Identity = 71/97 (73.20%), Postives = 87/97 (89.69%), Query Frame = 0 
Query:    2 IQYILLFSRQGKLRLQKWYHAIPLKDKKKITRDLTTMILSRKPKMCSFLEYKDLKVVYKRYASLFFCVAIERGDNELLSLEIIHRYVEILDKYFGNV 98
            +Q++LLFSRQGKLRLQKWY  +  K+KKKITR+L   +L+RKPKMCSFLE++DLK+VYKRYASL+FC AIE  DNEL++LEIIHRYVE+LDKYFG+V
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV 97
The following BLAST results are available for this feature:
BLAST of TCONS_00052101-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP1S25.624e-4973.20AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
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