TCONS_00052169-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052169-protein
Unique NameTCONS_00052169-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052169-protein ID=TCONS_00052169-protein|Name=TCONS_00052169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
FHSSNIKKKMTSKRDPNKTIQEYLEKQNRPYSATDIFQNLHKEFGKTAVV
KALESLAEQRKVIEKTYGKQKVYGPCQEKFGDIKPEELKALDTKAADLQE
KLSKLKSEVHAQDSEISSFSKQMTTQELDNACKTLKERNMELTSKINKIK
NGRCLISKEDRQKIKVHTGKMVTHWKKRKRMTTDMMDCILEGYPKTKKHL
IDETGVETDEEIGIKIPT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033034XLOC_033034Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052169TCONS_00052169Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010776Hop2
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0007131reciprocal meiotic recombination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007131 reciprocal meiotic recombination
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..115
NoneNo IPR availableCOILSCoilCoilcoord: 125..152
NoneNo IPR availableGENE3D1.20.5.730coord: 85..153
e-value: 2.3E-6
score: 27.0
IPR010776Homologous-pairing protein 2PFAMPF07106TBPIPcoord: 17..182
e-value: 5.6E-44
score: 149.8
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 4..84
e-value: 2.2E-17
score: 62.6

Blast
[Close]
BLAST of TCONS_00052169-protein vs. Swiss-Prot (Human)
Match: HOP2 (Homologous-pairing protein 2 homolog OS=Homo sapiens GN=PSMC3IP PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.184e-45
Identity = 76/197 (38.58%), Postives = 116/197 (58.88%), Query Frame = 0 
Query:   23 YLEKQNRPYSATDIFQNLHKE--FGKTAVVKALESLAEQRKVIEKTYGKQKVYGPCQEKFGDIKPEELKALDTKAADLQEKLSKLKSEVHAQDSEISSFSKQMTTQELDNACKTLKERNMELTSKINKIKNGRCLISKEDRQKIKVHTGKMVTHWKKRKRMTTDMMDCILEGYPKTKKHLIDETGVETDEEIGIKIP 217
            YL++QNRPYS+ D+F NL +E   GK  VVK LE LA+Q K+ EK YGKQK+Y   Q++F  +   +L+ LD K   L  K+  L+      ++E+   S  +TT E+    + LK+       ++  IK     ++ E+++++     K    W+KRKRM T++ D ILEGYPK+KK   +E G+ETDE+  + +P
Sbjct:   19 YLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMATELSDAILEGYPKSKKQFFEEVGIETDEDYNVTLP 215
The following BLAST results are available for this feature:
BLAST of TCONS_00052169-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOP23.184e-4538.58Homologous-pairing protein 2 homolog OS=Homo sapie... [more]
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