TCONS_00052179-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052179-protein
Unique NameTCONS_00052179-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052179-protein ID=TCONS_00052179-protein|Name=TCONS_00052179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MEEETQTNVEQEVSSTVPETVTKENIEDVETMKKEKKTENCQFKSRLGIY
LVKADLPQHVLDAIYWNKIPKTAGMFGGIMFLLMSLYWYPFLTVVTNFCL
ALLAVAFLYRIGMTIVNAVQKTSPEHPFQKLLEKDIKVSDERVDSFSKCL
AKEINCTVKCSQDLFLVKDVFKSMKFGVLLWLLSYVASWISPLTMLTLCV
LLAFTVPKLYEEKYVQIDEAIKSVTVAIGAVLETAKQKLPPSALKYLGVN
EEKKTN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033042XLOC_033042Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052179TCONS_00052179Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003388Reticulon
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003388ReticulonPFAMPF02453Reticuloncoord: 60..223
e-value: 6.2E-38
score: 130.1
IPR003388ReticulonPROSITEPS50845RETICULONcoord: 60..256
score: 38.327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Blast
[Close]
BLAST of TCONS_00052179-protein vs. Swiss-Prot (Human)
Match: RTN4 (Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 9.081e-36
Identity = 63/159 (39.62%), Postives = 98/159 (61.64%), Query Frame = 0 
Query:   60 VLDAIYWNKIPKTAGMFGGIMFLLMSLYWYPFLTVVTNFCLALLAVAFLYRIGMTIVNAVQKTSPEHPFQKLLEKDIKVSDERVDSFSKCLAKEINCTVKCSQDLFLVKDVFKSMKFGVLLWLLSYVASWISPLTMLTLCVLLAFTVPKLYEEKYVQID 218
            V+D +YW  I KT  +FG  +FLL+SL  +  ++V     LALL+V   +RI   ++ A+QK+   HPF+  LE ++ +S+E V  +S      +NCT+K  + LFLV D+  S+KF VL+W+ +YV +  + LT+L L ++  F+VP +YE    QID
Sbjct: 1005 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQID 1163
The following BLAST results are available for this feature:
BLAST of TCONS_00052179-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTN49.081e-3639.62Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2[more]
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