Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00052201-protein ID=TCONS_00052201-protein|Name=TCONS_00052201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp LDIPRAPGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDLELEVERFKIEC IWQSIMEEEIKKSPMVIWLKTLANHTYSTVGMNQPQDTGYKGQKGVFPTN VPNSNNKRGRGTYRGHKRPWESGPRGGGRGGRGGRGGWNNNNNRGGANK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
L D I P R A P G L G L L L E R V E Y Q Q Y N E K Y G N D G L H N P L T W Q D L E L E V E R F K I E C I W Q S I M E E E I K K S P M V I W L K T L A N H T Y S T V G M N Q P Q D T G Y K G Q K G V F P T N V P N S N N K R G R G T Y R G H K R P W E S G P R G G G R G G R G G R G G W N N N N N R G G A N K 20 40 60 80 100 120 140 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 80..149
Blast
BLAST of TCONS_00052201-protein vs. Swiss-Prot (Human)
Match:
TRUA (tRNA pseudouridine synthase A, mitochondrial OS=Homo sapiens GN=PUS1 PE=1 SV=3)
HSP 1 Score: 86.6557 bits (213), Expect = 9.474e-21
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 0
Query: 1 LDIPRAPGLGLLLERVEYQQYNEKYGNDGLHNPLTWQDLELEVERFKIECIWQSIMEEEIKKSPMVIWLKTLANHTYSTVGMN 83
+D+P+APGLGL+LERV +++YN+++GNDGLH PL W E +V FK E I+ +I+ E + M WL TL H +S +
Sbjct: 323 VDVPKAPGLGLVLERVHFEKYNQRFGNDGLHEPLDWAQEEGKVAAFKEEHIYPTIIGTERDERSMAQWLSTLPIHNFSATALT 405
The following BLAST results are available for this feature:
BLAST of TCONS_00052201-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
L D I P R A P G L G L L L E R V E Y Q Q Y N E K Y G N D G L H N P L T W Q D L E L E V E R F K I E C I W Q S I M E E E I K K S P M V I W L K T L A N H T Y S T V G M N Q P Q D T G Y K G Q K G V F P T N V P N S N N K R G R G T Y R G H K R P W E S G P R G G G R G G R G G R G G W N N N N N R G G A N K 20 40 60 80 100 120 140 Expect = 9.47e-21 / Id = 45.78 Sequence TRUA
Match Name E-value Identity Description
TRUA 9.474e-21 45.78 tRNA pseudouridine synthase A, mitochondrial OS=Ho... [more]
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