TCONS_00052236-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052236-protein
Unique NameTCONS_00052236-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052236-protein ID=TCONS_00052236-protein|Name=TCONS_00052236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MARGGKGRKISGGNDGVVYESGPSESSGGIGLFNILIFFLATTSIAINVG
IIYGAIPIQGCEGPEGKPGRQGPAGPQGVAGPIGPEGPKGDAGDEGPTGP
QGDEGAQGPKGDAGEAGPEGPAGSKGDAGADGAPGADGKDGAAGKDGAEG
PVGPIGAAGKDGEQGSQGPAGPAGPPGPQGPQGEEGPQGKRGERGPPGPP
GPEGPEGPEGPQGKQGLRGPQGETGTQGPAGEQGTAGEQGQPGQQGERGP
EGAAGQPAEA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033060XLOC_033060Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052236TCONS_00052236Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 96..154
e-value: 8.3E-7
score: 28.6
coord: 198..257
e-value: 6.0E-10
score: 38.6
coord: 60..117
e-value: 6.3E-9
score: 35.4
NoneNo IPR availableGENE3D2.160.20.50coord: 207..258
e-value: 1.3E-4
score: 21.3
coord: 52..107
e-value: 1.4E-7
score: 30.7
coord: 108..206
e-value: 0.22
score: 10.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..260

Blast
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BLAST of TCONS_00052236-protein vs. Swiss-Prot (Human)
Match: C1T9B (Complement C1q and tumor necrosis factor-related protein 9B OS=Homo sapiens GN=C1QTNF9B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.120e-23
Identity = 76/155 (49.03%), Postives = 91/155 (58.71%), Query Frame = 0 
Query:  108 GPKGDAGEAGPEGPAGSKGDAGADGAPGADGKDGAAGKDGAEGPVGPIGAAGKDGEQGS------QGPAGPAGPPGPQGPQGEEGPQGKRGERGPPGPPGPEGPEGPEGPQGKQGLRGPQGETGTQGPAGEQGTAGEQGQPGQQGERGPEGAAGQ 256
            G  G  G  G +G  G KGDAG  G PG+ GKDG +G+ G  G  G + A G  G+QGS       GP G AGP G +G +GE GPQG++G +G  GP GPEGP G  GP G  GL GP G  G  GP GE G  G QG+PG +G RG +G  G+
Sbjct:   35 GHNGLPGRDGRDGAKGDKGDAGEPGCPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGE 189

HSP 2 Score: 85.8853 bits (211), Expect = 1.470e-19
Identity = 84/205 (40.98%), Postives = 106/205 (51.71%), Query Frame = 0 
Query:   51 IIYGAIPIQGCEGP--------EGKPGRQGPAGPQGVAGPIGPEGPKGDAGDEGPTGPQGDEGAQGPKGDAGEAGPEGPA---GSKGDAGADGAPGADGKDGAAGKDGAEGPVGPIGAAGKDGEQGSQGPAGPAGPPGPQGPQGEEGPQGKRGERGPPGPPGPEGPEGPEGPQGKQGLRGPQGETGTQGPAGEQGTAGEQGQPGQ 244
            I +  + I+ C G         +G PG  G  G  G+ G  G +G KGD GD G  G  G  G  G  G+ GE G +G     G KGD G+ G+PG  G  G AG      P+G  G  G+ G QG +G  G  GP GP+GP+G  GP       GP G PGP GP G  GP+G+ G  GPQGE G +G  G +G  GE+G+ G+
Sbjct:    3 IWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGCPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAG------PMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPL------GPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGE 195
The following BLAST results are available for this feature:
BLAST of TCONS_00052236-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1T9B2.120e-2349.03Complement C1q and tumor necrosis factor-related p... [more]
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