TCONS_00052285-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052285-protein
Unique NameTCONS_00052285-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052285-protein ID=TCONS_00052285-protein|Name=TCONS_00052285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
MADSQQEEESNNKNAVLEEERNELNIPNTQGASNFKGGYDYDLVDEEIKE
LNCFVCFLLIRNAVELGCGHSLCMLCLDSWEKRVNESGQAFECPSCKENI
DRKNVKPNQTIDRIITSSIRVKCPQNPHGCQWINVISNVQDHLNKSCVYI
IIPCTNVGCEEIVLKKDVDEHSRICGYRMTLCTDCHIEICFANIDSHEVE
CVKAIVQCPNNPCLEKMTRETANHHVTKECVYRPIECPFAEAGCRYPVNR
TNYEQHQREYMEMHLALVMKELRAVKEDSRQQVTQLRNELDATKNEIASL
RTELADQHRIDELGRNLRSSMDKIFISMKALGGKIHDDIVELNATIREKV
ISFDKSYALLEGRLGTFNLWIKKRVDEMADHFRGQVLQYTDLDMEQVFTD
NIRKQTENNESATNSTVVFNDDLREKLRLTSYLNEHRELSGKLHFALANI
QAALLQPTYTERYRGMLDFMEVNKKIRTENGYYVIKVQMLDIFEDEWNIV
ILKKQTMFTEYKNTKHQDLLINHYAKTISIYFLDEGAFLHDVPSVNVYSP
RKMYKLMLPSVQRDDMRFRINFTTLSTSNLIQNGFLLLRIQEVPKMLVDT
SFFTRSTTIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033078XLOC_033078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052285TCONS_00052285Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 269..310
NoneNo IPR availableGENE3D1.10.287.540coord: 268..294
e-value: 6.9E-4
score: 19.0
coord: 295..350
e-value: 0.0017
score: 17.8
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 50..102
e-value: 2.0E-7
score: 30.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 47..103
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 53..96
e-value: 2.9E-4
score: 30.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 53..97
score: 11.619
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 53..100
e-value: 3.5342E-5
score: 40.892
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 197..256
e-value: 1.4E-12
score: 48.0
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 196..254
score: 12.485
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 142..185
score: 8.897
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..119
e-value: 1.9E-14
score: 52.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 215..257
e-value: 1.2E-10
score: 40.9
coord: 173..214
e-value: 9.9E-4
score: 18.8
coord: 120..172
e-value: 3.3E-12
score: 45.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 68..77
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 118..185
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 204..259

Blast
[Close]
BLAST of TCONS_00052285-protein vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.278e-23
Identity = 76/269 (28.25%), Postives = 127/269 (47.21%), Query Frame = 0 
Query:   34 NFKGGYDYDLVDEEIKELNCFVCFLLIRNAVELGCGHSLCMLCLDSWEKRVNESGQAFECPSCKENIDRKNVKPNQTIDRIITSSIRVKCPQNPHGCQWINVISNVQDHLNKSCVYIIIPCTNVGCEEIVLKKDVDEH-SRICGYRMTLCTDCHIEICFANIDSHEVE-CVKAIVQCPNNPCLEKMTRETANHHVTKECVYRPIECPFAEAGCRYPVNRTNYEQHQREYMEMHLALVMKELRAVKEDSRQQVTQLRNELDATKNEIASL 300
            +F+   +Y  V+   +   C  C  ++ N  + GCGH  C  C+ S    + E      CP  KE I  + V  +    R +  ++ V C   P GC    ++   QDHL + C++  + C+N  C E VL+KD+ EH S  C +R   C  C  ++   N+ +HE   C +  V CPNN C + + +   + H+   C     +CPF   GC     R N +QH+   +  H+ LV+++   ++E    Q++ L   L+  +++I  L
Sbjct:   26 DFEPSIEYQFVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILS----LRELNTVPICPVDKEVIKSQEVFKDNCCKREVL-NLYVYCSNAP-GCNAKVILGRYQDHL-QQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNN-CAKIILKTEVDEHLAV-CPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEE----QISDLHKSLEQKESKIQQL 281
The following BLAST results are available for this feature:
BLAST of TCONS_00052285-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF53.278e-2328.25TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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