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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052285 ID=TCONS_00052285|Name=TCONS_00052285|organism=Clytia hemisphaerica|type=transcript|length=2790bpRun BLAST on NCBI protein sequence of TCONS_00052285-protein >TCONS_00052285-protein ID=TCONS_00052285-protein|Name=TCONS_00052285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp MADSQQEEESNNKNAVLEEERNELNIPNTQGASNFKGGYDYDLVDEEIKERun BLAST on NCBI transcript from alignment at scaffold_213:1100324..1123984+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052285 ID=TCONS_00052285|Name=TCONS_00052285|organism=Clytia hemisphaerica|type=transcript|length=23661bp|location=Sequence derived from alignment at scaffold_213:1100324..1123984+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:1100324..1123984+ >TCONS_00052285 ID=TCONS_00052285|Name=TCONS_00052285|organism=Clytia hemisphaerica|type=CDS|length=14664bp|location=Sequence derived from alignment at scaffold_213:1100324..1123984+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052285 vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.043e-22 Identity = 76/269 (28.25%), Postives = 127/269 (47.21%), Query Frame = 2
Query: 209 NFKGGYDYDLVDEEIKELNCFVCFLLIRNAVELGCGHSLCMLCLDSWEKRVNESGQAFECPSCKENIDRKNVKPNQTIDRIITSSIRVKCPQNPHGCQWINVISNVQDHLNKSCVYIIIPCTNVGCEEIVLKKDVDEH-SRICGYRMTLCTDCHIEICFANIDSHEVE-CVKAIVQCPNNPCLEKMTRETANHHVTKECVYRPIECPFAEAGCRYPVNRTNYEQHQREYMEMHLALVMKELRAVKEDSRQQVTQLRNELDATKNEIASL 1009
+F+ +Y V+ + C C ++ N + GCGH C C+ S + E CP KE I + V + R + ++ V C P GC ++ QDHL + C++ + C+N C E VL+KD+ EH S C +R C C ++ N+ +HE C + V CPNN C + + + + H+ C +CPF GC R N +QH+ + H+ LV+++ ++E Q++ L L+ +++I L
Sbjct: 26 DFEPSIEYQFVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILS----LRELNTVPICPVDKEVIKSQEVFKDNCCKREVL-NLYVYCSNAP-GCNAKVILGRYQDHLQQ-CLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNN-CAKIILKTEVDEHLAV-CPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEE----QISDLHKSLEQKESKIQQL 281 The following BLAST results are available for this feature:
BLAST of TCONS_00052285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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