TCONS_00052328-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052328-protein
Unique Name	TCONS_00052328-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	849

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052328-protein ID=TCONS_00052328-protein|Name=TCONS_00052328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=849bp
MMMKKKHXNYASVKLYFKPEKDFDDDEEEAHGMDEVVEASRQVVVECSKF
AAWECTSKSWHQSYGTTLYDGVEVDKLKALSKNQQKIIHRNDNSLRKVKI
LNFPQYNRYKTCIKMLNLGVPMTYFQLLARGGLDIKNLNTLILFSKKQFE
KEDVEDYSPTLDVPVPVFKGRPRKRKNIQNPFSNDDAVTNKKIKTIDIKS
NSTKQPTQIKIDHKTNGRIGPILNKPIEIHPPPPVKRVVLDLPKPEPPPG
RGVRGRDTICHEKREYTLKDKEEHHRFSEDLHRYMLNNGTPILKIPRIGC
APVNPLVLYRAVMDRGGFAQVTLHRNWRDVYDCLGHSTMITNAATATRKL
YERMLLPYENHMRSNPGNPGKRISDKRAHQATLPKFSSNDLIRPREHFEH
KNPEQQTHRQQQQPIVIAPKVPHVNSMPQNAVNSAENLSISLMMSKQRGR
PSKKFRNQIEKLRSRQTMQLNEEQQHAPMFAGKTARLPPRKQPWVNELNV
DIASRQHTEVPMSSNPAFRNKDKERRLSDSSDIELISPRRGTEIHSPLRQ
GRRIYPSTKDSVGTSSSGTNGFVPDAFVSNVHNSTDKEQPNSQKKGQCEF
KIQSVRSLATVDENKPSSSQQPNEAASSGTTQYVHYPYSTTNTYEYIPTK
FYSLSGSNKLVPINALPVGNSGKQPTQKAMFRDAGFSMRTFRHDQSADNT
SYKIKSTALKNHEPYIIHHPSHLNRGYREIPGQYPVIYTHQPGVRTTGKS
ERSTNYVRQDMRYVTSAPVDYSPPNGTLVYGRVQPRYEKISPRSSGTTST
RGRGRGRGRPPSRPSSSTTYVKYIDPPAQSVQKWPAGTELLKVKAHVNM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033089	XLOC_033089	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052328	TCONS_00052328	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001606	ARID_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM01014	ARID_2	coord: 268..359 e-value: 4.7E-19 score: 79.3
None	No IPR available	GENE3D	1.10.150.60		coord: 257..417 e-value: 1.2E-29 score: 102.1
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 272..364 e-value: 6.9E-25 score: 98.7
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 273..359 e-value: 2.6E-16 score: 59.9
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 271..363 score: 24.85
IPR001606	ARID DNA-binding domain	SUPERFAMILY	46774	ARID-like	coord: 264..365

Blast

[Close]

BLAST of TCONS_00052328-protein vs. Swiss-Prot (Human)
Match: ARI5B (AT-rich interactive domain-containing protein 5B OS=Homo sapiens GN=ARID5B PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 6.515e-26
Identity = 105/388 (27.06%), Postives = 165/388 (42.53%), Query Frame = 0

Query:   11 ASVKLYFKPEKDFDDDEEEAHGMDEVVEASRQVVVEC--------SKFAAWECTSKSWHQSYGTTLYDGVEVDKLKALSKNQQKIIHRN---------------DNSLRKVKILNFPQYNRYKTCIKMLNL--GVPMTYFQLLARGGLDIKNLNTLILFSKKQFEKEDVEDYSPTLDVPVPVFKGRPRKRKNI---QNPFSN-DDAVTNKKIKTIDIKSNSTKQPTQIKIDHKTNGRIGPILNKPIEIHPPPPVKRVVLDLPKPEPPPGRGVRGRDTICHEKREYTLKDKEEHHRFSEDLHRYMLNNGTPILKIPRIGCAPVNPLVLYRAVMDRGGFAQVTLHRNWRDVYDCLGHSTMITNAATATRKLYERMLLPYENHMRSNPGNP 369
            +S KLYF PE D        HG DEV+  S +V+V+         S F+ W C    +H     T   G    K +AL K +Q  ++                 D     V +L++PQY RY++ +K +       +T    LA GG+ + + N  IL+ +  F+   + +     D   P  KGRPRK+K     ++ FS   D+  N   K +           ++K + ++       L KP   H      + V +  KP+   G   R                  +   F   L++YM    TPI +IP +G   +N   +++A    GG+  +T  R W+ +YD LG +   T+AAT TR+ YER++LPYE  ++     P
Sbjct:   71 SSSKLYFLPE-DTPQGRNSDHGEDEVIAVSEKVIVKLEDLVKWVHSDFSKWRC---GFHAGPVKTEALGRNGQK-EALLKYRQSTLNSGLNFKDVLKEKADLGEDEEETNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRKKKPCPQRRDSFSGVKDSNNNSDGKAV----------AKVKCEARS------ALTKPKNNH----NCKKVSNEEKPKVAIGEECRA-----------------DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKP 416

The following BLAST results are available for this feature:

BLAST of TCONS_00052328-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052328-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARI5B	6.515e-26	27.06	AT-rich interactive domain-containing protein 5B O...	[more]

You are here

TCONS_00052328-protein (polypeptide) - C. hemisphaerica