TCONS_00052330-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052330-protein
Unique NameTCONS_00052330-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052330-protein ID=TCONS_00052330-protein|Name=TCONS_00052330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MATQTREAPSSNNKEQQQKDSAEKSARSVFVGNIPYEATDEQLKDIFNQA
GPVLSFRLVYDRETGKPKGFGFCEYKDQDTAQSAIRNLNGTEIHGRTLRV
DSASSQKAAADETKTVEKEISPYGDSVNPTRAPEAITSAVASLPPEQMFE
LMKQMKLCIQNNPEEARHMLLQNPQLAYALLQAQVIMKIVDPKVADAILH
QPRGEPLPINTLMEKAGIGHEQKPGPGGPPPPQDWRGDHPPREMPIRDVY
REEMGRPPNDFGRPPMRDMRGPPPPDRDFRPPPMDDRFREGPPFDPRDRP
PPADPRGGPPSMPPMDRGDPRVREEMRPPPRDDPRGPPRDRPPPNRDPRD
PRGGPPPPVSGAELIRSGGPPFPPGPEHRDPPSGPPPPVTSAPSLGAANP
VAGLGGPGGPNEDEKQRLIQQVLNLTEQQINMLPEDQRENIRMLRSQYNS
GRS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033090XLOC_033090Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052330TCONS_00052330Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR025742CSTF2_hinge
IPR026896CSTF_C
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0031124mRNA 3'-end processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031124 mRNA 3'-end processing
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 28..101
e-value: 8.3E-31
score: 118.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 29..99
e-value: 5.8E-26
score: 90.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 27..105
score: 21.617
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 16..107
NoneNo IPR availableGENE3D3.30.70.330coord: 4..122
e-value: 1.8E-33
score: 114.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableCDDcd12671RRM_CSTF2_CSTF2Tcoord: 29..103
e-value: 7.75241E-49
score: 161.888
IPR025742Cleavage stimulation factor subunit 2, hinge domainPFAMPF14327CSTF2_hingecoord: 122..198
e-value: 2.6E-30
score: 104.6
IPR026896Transcription termination and cleavage factor, C-terminal domainPFAMPF14304CSTF_Ccoord: 412..450
e-value: 1.2E-15
score: 56.6

Blast
[Close]
BLAST of TCONS_00052330-protein vs. Swiss-Prot (Human)
Match: CSTF2 (Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.781e-85
Identity = 128/185 (69.19%), Postives = 160/185 (86.49%), Query Frame = 0 
Query:   21 SAEKSARSVFVGNIPYEATDEQLKDIFNQAGPVLSFRLVYDRETGKPKGFGFCEYKDQDTAQSAIRNLNGTEIHGRTLRVDSASSQKAAADETKTVEKEI----SPYGDSVNPTRAPEAITSAVASLPPEQMFELMKQMKLCIQNNPEEARHMLLQNPQLAYALLQAQVIMKIVDPKVADAILHQ 201
            + ++S RSVFVGNIPYEAT+EQLKDIF++ GPV+SFRLVYDRETGKPKG+GFCEY+DQ+TA SA+RNLNG E  GR LRVD+A+S+K   +E K++        SPYG++++P  APE+I+ AVASLPPEQMFELMKQMKLC+QN+P+EAR+MLLQNPQLAYALLQAQV+M+IVDP++A  ILH+
Sbjct:   10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK-NKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHR 193
The following BLAST results are available for this feature:
BLAST of TCONS_00052330-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSTF26.781e-8569.19Cleavage stimulation factor subunit 2 OS=Homo sapi... [more]
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