TCONS_00052370-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052370-protein
Unique NameTCONS_00052370-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length119

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052370-protein ID=TCONS_00052370-protein|Name=TCONS_00052370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MHLPWHHRPSRGIPVEIQRHEFVPPLFREEREVVEQQNPSQNNEPKGLSQ
RELDKLPSYHVTKKTLEEFNENDRCVVCMSEYEVEEKLRVLPCAHEFHAP
CVDKWLMTNPTCPICRASV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033109XLOC_033109Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052370TCONS_00052370Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 75..115
e-value: 2.1E-7
score: 40.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 74..116
e-value: 2.7E-14
score: 53.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 75..116
score: 12.961
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 75..119
e-value: 1.35832E-10
score: 51.6776
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 48..119
e-value: 1.5E-19
score: 68.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..55
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 62..119

Blast
[Close]
BLAST of TCONS_00052370-protein vs. Swiss-Prot (Human)
Match: RNF44 (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.859e-21
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 0 
Query:   42 NNEPKGLSQRELDKLPSYHVTKKTLEEFNENDRCVVCMSEYEVEEKLRVLPCAHEFHAPCVDKWLMTNPTCPICRASV 119
            + +P+GL++ ++++LPSY     + +  +E   CVVC S++E  + LRVLPC HEFH  CVDKWL  N TCPICRA  
Sbjct:  349 DAKPRGLTKADIEQLPSYRFNPDSHQ--SEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
The following BLAST results are available for this feature:
BLAST of TCONS_00052370-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF445.859e-2148.72RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
back to top