TCONS_00052467-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052467-protein
Unique NameTCONS_00052467-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052467-protein ID=TCONS_00052467-protein|Name=TCONS_00052467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MSIYYALVARGPIILVDFTEHHGNFEQITTKILQSIDTSQDSKCSYTSES
YVFHVMISQGLVFLCMADESMGKTMPYGYLTEIKNKFMGGTLRERAFHCN
AYELKHDFSPVLMQQMRRFNKGDVETNSKVKNLQKDVDTVKSVMTENIGK
LLERGEKLDVLVDKTEDLSKSSESFARSAKKVRRKMWWQNKKMCLILSCV
LFVILAIITLVILYEVGVFSPSNSSSSGGGGKTTSPPTTTTTTITTKIMT
TIKTTIQTTFKTTASTPVKNGTTILPPTNSTTTPSKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033176XLOC_033176Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052467TCONS_00052467Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR010908Longin_dom
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001388SynaptobrevinPRINTSPR00219SYNAPTOBREVNcoord: 134..153
score: 42.03
coord: 190..209
score: 31.22
coord: 154..173
score: 39.46
IPR001388SynaptobrevinPFAMPF00957Synaptobrevincoord: 127..212
e-value: 1.4E-31
score: 108.0
IPR001388SynaptobrevinPROSITEPS50892V_SNAREcoord: 129..189
score: 19.137
IPR010908Longin domainSMARTSM01270Longin_2coord: 28..111
e-value: 1.1E-19
score: 81.4
IPR010908Longin domainPFAMPF13774Longincoord: 31..108
e-value: 2.5E-18
score: 65.8
IPR010908Longin domainPROSITEPS50859LONGINcoord: 7..112
score: 24.081
NoneNo IPR availableGENE3D1.20.5.110coord: 139..214
e-value: 2.1E-32
score: 110.1
NoneNo IPR availableGENE3D3.30.450.50coord: 1..138
e-value: 1.6E-34
score: 118.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..287
NoneNo IPR availableCDDcd15868R-SNARE_VAMP8coord: 127..193
e-value: 1.75181E-27
score: 101.24
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 126..190
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 3..120

Blast
[Close]
BLAST of TCONS_00052467-protein vs. Swiss-Prot (Human)
Match: VAMP7 (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 2.682e-32
Identity = 69/195 (35.38%), Postives = 112/195 (57.44%), Query Frame = 0 
Query:    1 MSIYYALVARGPIILVDFTEHHGNFEQITTKILQSIDTSQDSKCSYTSESYVFHVMISQGLVFLCMADESMGKTMPYGYLTEIKNKFMGGTLRERAFHCNAYELKHDFSPVLMQQMRRF--NKGDVETNSKVKNLQKDVDTVKSVMTENIGKLLERGEKLDVLVDKTEDLSKSSESFARSAKKVRRKMWWQNKKM 193
            M+I +A+VARG  IL       GNF ++T +IL  I  S+++K +Y+  +Y+FH +    +V+LC+ D+   ++  + +L EIK +F   T   RA     Y +  +FS VL  Q++    NKG      KV   Q  VD +K +M  NI  + +RGE+L++L+DKTE+L  SS +F  +++ + R M  +N K+
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQT-TYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGL----DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 189
The following BLAST results are available for this feature:
BLAST of TCONS_00052467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAMP72.682e-3235.38Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
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