TCONS_00052518-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052518-protein
Unique NameTCONS_00052518-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length197

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052518-protein ID=TCONS_00052518-protein|Name=TCONS_00052518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MIGKLIFLGCFTYCASYFINIDAHGEECFHDRVNPGTKMALRFEVADGGF
LDIDVKITGPDNKEIYSGQRESNGKYTFAAHMEGIYSYCFSNKMSTMTPK
IVKFSMDIGEPPKDTSKEDAEHHDKLNDMISQLTLSLAGVKHEQEYMQVR
DRVHRAINDSTNSRVVWWAFFESLILVCMTLGQVYYLKRFFEVRRVI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033208XLOC_033208Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052518TCONS_00052518Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 16..192
e-value: 1.3E-72
score: 257.2
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 19..192
e-value: 3.8E-48
score: 163.7
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 26..108
score: 21.758
IPR009038GOLD domainSUPERFAMILY101576Supernatant protein factor (SPF), C-terminal domaincoord: 24..114
NoneNo IPR availableGENE3D2.60.120.680coord: 60..108
e-value: 0.003
score: 17.2

Blast
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BLAST of TCONS_00052518-protein vs. Swiss-Prot (Human)
Match: TMED2 (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.538e-99
Identity = 127/183 (69.40%), Postives = 155/183 (84.70%), Query Frame = 0 
Query:   15 ASYFINIDAHGEECFHDRVNPGTKMALRFEVADGGFLDIDVKITGPDNKEIYSGQRESNGKYTFAAHMEGIYSYCFSNKMSTMTPKIVKFSMDIGEPPKDTSKEDAEHHDKLNDMISQLTLSLAGVKHEQEYMQVRDRVHRAINDSTNSRVVWWAFFESLILVCMTLGQVYYLKRFFEVRRVI 197
            + YF++IDAH EECF +RV  GTKM L FEVA+GGFLDIDV+ITGPDNK IY G RES+GKYTFAAHM+G Y +CFSN+MSTMTPKIV F++DIGE PK    E   H +KL +MI++L +++  VKHEQEYM+VR+R+HRAIND+TNSRVV W+FFE+L+LV MTLGQ+YYLKRFFEVRRV+
Sbjct:   19 SGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
The following BLAST results are available for this feature:
BLAST of TCONS_00052518-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMED21.538e-9969.40Transmembrane emp24 domain-containing protein 2 OS... [more]
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