TCONS_00052561-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052561-protein
Unique Name	TCONS_00052561-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	595

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052561-protein ID=TCONS_00052561-protein|Name=TCONS_00052561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp
MASVTETTVDTTNLDDHIRSPFQLSTKSKDKSVKLVSLPQNLATSPTQNN
NESGSGSRDLLSSVSSTDSLEAGSPRTSSFGASPFSLNIKKVSKSSVGST
TPLSPILSPSSLSSATTLTNSQDKIIEIQKEVNSLKKENEAKDAKLSSSL
KSIKQFWSPELKKERAARKEETEKCLILKEKYQIANSQIEEYKNALEDLE
SEFKSQQKNIQDLNEKVKNNHEETTKDHQDQLEKLRTEVRTKEDEIFVLT
KTLEDLENEYNSQEDQLKEKNKCVAELEHILTDYEQKLEDYDHCKRDLEK
AVNAVQEQEIDYQMLKKEYDEMKSVHSESQANEEEVQRLQIKIDELERDL
TDQTKLVDASDEELKRLEKVNEEKEVRIHRLEEELNKNEKEYDDVKEQLS
TLQTALEEIETENKTLQEKIQEGTISSDSLEQKDREIRNLNTKYEKLDKY
LTERENALELCRDELKGVKNANRDLRMEKDNLENQLFEHKSTVDRLEKQK
DRFTRPKEDVALVSAHNELKAKHEETTKQIQELRGKLSQYDDTMKTKDNS
ISALESSQSEQNEIIFGLEKQLEESNAKTEQNQKNIEEVLDIGNF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033241	XLOC_033241	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052561	TCONS_00052561	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019323	ELKS/CAST

Vocabulary: **Cellular Component**
Term	Definition
GO:0048786	presynaptic active zone

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0048786	presynaptic active zone

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 458..499
None	No IPR available	COILS	Coil	Coil	coord: 175..325
None	No IPR available	COILS	Coil	Coil	coord: 329..426
None	No IPR available	COILS	Coil	Coil	coord: 118..145
None	No IPR available	COILS	Coil	Coil	coord: 516..543
None	No IPR available	COILS	Coil	Coil	coord: 430..450
None	No IPR available	COILS	Coil	Coil	coord: 569..589
None	No IPR available	GENE3D	1.20.120.330		coord: 109..225 e-value: 0.0048 score: 16.0
None	No IPR available	GENE3D	1.20.5.170		coord: 324..423 e-value: 1.8E-6 score: 27.5 coord: 226..323 e-value: 2.8E-5 score: 23.6
None	No IPR available	GENE3D	1.10.287.1060		coord: 511..591 e-value: 0.024 score: 14.8
None	No IPR available	GENE3D	1.20.5.340		coord: 424..510 e-value: 3.4E-5 score: 23.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
IPR019323	Active zone protein ELKS	PFAM	PF10174	Cast	coord: 124..334 e-value: 3.7E-22 score: 78.3

Blast

[Close]

BLAST of TCONS_00052561-protein vs. Swiss-Prot (Human)
Match: RB6I2 (ELKS/Rab6-interacting/CAST family member 1 OS=Homo sapiens GN=ERC1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.507e-24
Identity = 124/457 (27.13%), Postives = 233/457 (50.98%), Query Frame = 0

Query:   76 RTSSFGASPFSLNIKKVSKSSVGSTT------PLSPI----LSPSSLSSA--TTLTNSQDKIIEIQKEVNSLKKENEAKDAKLSSSLKSIKQFWSPELKKERAARKEETEKCLILKEKYQIANSQIEEYKNALEDLESEFKSQQKNIQDLNEKVKNNHEETTKDH------QDQLEKLRTEVRTKEDEIFVLTKTLEDLENEYNSQEDQLKEKNKCVAELEHIL----TDYEQKLEDYDHCKRDLEKAVNA------VQEQEIDYQMLKKEYD---EMKSVHSESQANEEEVQRLQIKIDELERDLTDQTKLVDA--SDEELKRLEKVNEEKEVRIHRLEEELNKNEKEYDDVKEQLSTLQTALEEIETENKTLQEKIQEGTISSDSLEQKDREIRNLNTKYEKLDKYLTERENALELCRDELKGVKNANRDLRMEKDNLENQLFEHKSTVDRLEKQ 499
            R ++ G+SP       ++ S V S T       L P+      P SL  A   T+ + Q ++ E+ +E + L+K+ E K++KLSSS+ SIK FWSPELKKERA RK+E  K  I KE+Y++   + +  +  ++ L+ E + Q    +DLN+  + +    T +       ++  ++L  E   +  E+F+L KTLE++E    +Q+  L  +++ + +L  +L       +   ED++  +R  E  ++       ++++E +  ML++E     E     ++++A +  ++    KI  +ER L D  + +    S+  L   E+  E K++ ++R   +  KN+ E   +KE+LS+ +   EE++ +   LQ +I  G +  + L +KD E+  L TK E L    ++ +  +E+ ++ L   +     L+ E D L  +L E ++ +++  KQ
Sbjct:  103 RMTAMGSSP------NIASSGVASDTIAFGEHHLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQ----RDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVE--QLKEELSSKEAQWEELKKKAAGLQAEI--GQVKQE-LSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544

The following BLAST results are available for this feature:

BLAST of TCONS_00052561-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052561-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RB6I2	1.507e-24	27.13	ELKS/Rab6-interacting/CAST family member 1 OS=Homo...	[more]

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TCONS_00052561-protein (polypeptide) - C. hemisphaerica