TCONS_00052563-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052563-protein
Unique Name	TCONS_00052563-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	312

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052563-protein ID=TCONS_00052563-protein|Name=TCONS_00052563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
KYFSHLILRQLKEKTKQLGLLKKNQTAEREKQHQLVNESKKVEQEIQQLE
DEKDKRDKRIIMLEDALRESVTIAVEREDLLASHKEMYENAVNKMNSTNS
EYERVELEKKITNIKNAFLILSLSEKDALIASMEATRKRQNEELFNIKQE
TLLASISEKDNQIAHLELQSSKTKKQDIKQLKLEKEKFVEQLKAQNNNRM
TILSNGENENNLLINELESAPPEQVYEAIRHLHNSTSKLEFYIEEFLSYS
NEQYKKVLDDLPTIPKTKCKSTDSLKKLSKPELLKELKVVDVDCNQLKGF
VHSLLDKLEGVA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033242	XLOC_033242	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052563	TCONS_00052563	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019323	ELKS/CAST

Vocabulary: **Cellular Component**
Term	Definition
GO:0048786	presynaptic active zone

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0048786	presynaptic active zone

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..66
None	No IPR available	COILS	Coil	Coil	coord: 81..108
None	No IPR available	COILS	Coil	Coil	coord: 130..150
None	No IPR available	COILS	Coil	Coil	coord: 171..198
IPR019323	Active zone protein ELKS	PFAM	PF10174	Cast	coord: 21..201 e-value: 1.5E-17 score: 63.0

Blast

[Close]

BLAST of TCONS_00052563-protein vs. Swiss-Prot (Human)
Match: RB6I2 (ELKS/Rab6-interacting/CAST family member 1 OS=Homo sapiens GN=ERC1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.763e-32
Identity = 103/315 (32.70%), Postives = 179/315 (56.83%), Query Frame = 0

Query:    9 RQLKEKTKQLGLLKKNQTAEREKQHQLVNESKKVEQEI----QQLEDEKDKRDKRIIMLEDALRESVTIAVEREDLLASHKEMYENAVNKMNSTNSEYERVELEKKITNIKNAFLILSLSEKDALIASMEATRKRQNEELFNIKQETLLASISEKDNQIAHLELQSSKTKKQ-DIKQLKLEKEKFVEQLKAQNNNRMTILSNGENENNL---LINELESAP-PEQVYEAIRHLHNSTSKLEFYIEEFLSYSNEQYKKVLDDLPTIPKT------KCKSTDSLKKLSKPELLKELKVVDVDCNQLKGFVHSLLDKL 308
            RQ+K++ K++  LK  +  E++K  Q++ E+++ E  +    QQL+D   K+D RI  LE+ALRESV I  ERE +LA  +    NA  ++       E+V+ E +    K +    SL+EK+  + ++ A R++  EE+  +KQE LLA+ISEKD  IA LEL SSK K Q ++  LK EK++ V+QLK Q  NRM ++++   +++      N+    P P+Q+ + +  L  + SKL+ YI    +  +++   +L  L T P +      +    + L+K+++ +L  EL+  + D  +L+ F +++L ++
Sbjct:  784 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGL-TPPASYNLDDDQAAWENELQKMTRGQLQDELEKGERDNAELQEFANAILQQI 1097

The following BLAST results are available for this feature:

BLAST of TCONS_00052563-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RB6I2	1.763e-32	32.70	ELKS/Rab6-interacting/CAST family member 1 OS=Homo...	[more]

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TCONS_00052563-protein (polypeptide) - C. hemisphaerica