TCONS_00052575-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052575-protein
Unique NameTCONS_00052575-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052575-protein ID=TCONS_00052575-protein|Name=TCONS_00052575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MTLKRGDTMTMNSFGNHHNNHQQHSNKQNTDTGLSLNLAVVGSKGAGKSA
ITVRFLTRRFIGEYASQADVCINRNIDVAGRIADVHVKDTNACDWLKGPS
ALIGWSTAIAIIYSVTDKKSFELATYILSQLNITKRLEADNVLLLANKCD
LEHLRQVSRDKGKELAMKYGTQFYETSAANDLNGVQHAFERLLFSALSSQ
ECKVQFNNYTEQTFPVQQRKCNRVQRDFRRDNSARSNKQLRRMSTGSHSS
SVDTMSTISDDDRFYAFNIDSSHSSTFSTPDQSPTTSPVPSAGRRKISLP
VLLEKMGLTSSSSSNHQHSSRKVSMAPRIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033245XLOC_033245Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052575TCONS_00052575Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 36..57
score: 33.68
coord: 174..196
score: 20.46
coord: 138..151
score: 39.11
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 33..199
e-value: 2.2E-11
score: 44.0
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 36..199
e-value: 4.1E-8
score: -8.4
NoneNo IPR availableGENE3D3.40.50.300coord: 99..197
e-value: 6.0E-18
score: 64.2
NoneNo IPR availableGENE3D3.40.50.300coord: 11..90
e-value: 0.014
score: 14.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..255
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 38..193
e-value: 2.5E-23
score: 82.4
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 26..259
score: 13.09
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 34..198

Blast
[Close]
BLAST of TCONS_00052575-protein vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.080e-28
Identity = 62/167 (37.13%), Postives = 95/167 (56.89%), Query Frame = 0 
Query:   36 LNLAVVGSKGAGKSAITVRFLTRRFIGEYASQADVCINRNIDVAGRIADVHVKDT-------NACDWLKGPSALIGWSTAIAIIYSVTDKKSFELATYI---LSQLNITKRLEADNVLLLANKCDLEHLRQVSRDKGKELAMKYGTQFYETSAANDLNGVQHAFERL 192
            + +AVVG+ G GK+A+ VRFLT+RFIG+Y   A     R + + G    + V+DT       N+    +  +  I W+ A+ I++S+TD KS+EL + +   + QL++  RL    V+++ANK DL H++QV    G +LA   G  FYE S + + N V  AF  L
Sbjct:   34 VKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLP---VVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVL 197
The following BLAST results are available for this feature:
BLAST of TCONS_00052575-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSLBB2.080e-2837.13Ras-like protein family member 11B OS=Homo sapiens... [more]
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