TCONS_00052608-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052608-protein
Unique NameTCONS_00052608-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052608-protein ID=TCONS_00052608-protein|Name=TCONS_00052608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MKLFQDKGREREILGIMVKCTNNQSGCKWQNELRQLETHQSECGYEETQC
VITLCSKRVQRRLLEQHHSEECDYRFVTCLYCTEEYMHYDEEEHIFECEE
FLLCCDFCTESDIPRKKLNDHLSNYCTKVPHSCPFETIGCREKLMLEDLV
NHKSKAIEKHLMLALDQIKEQKIELSAKDQRITGLENEVRSRHQQQKLCA
LNEIHTWELQNFKQNWKADKASFSKCFYSPQGYKINARLGPKKDDQSVSI
WFTTLEGPFDDTLEWPMNVESISCCVVDSEEKVYEIFELESEFLKDVALK
PPHNDCVGWEVFIPSDKLSKYLNGDNLTIRIQIKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033256XLOC_033256Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052608TCONS_00052608Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 94..152
e-value: 1.7E-10
score: 41.3
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 38..85
score: 10.525
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 88..149
score: 11.251
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 109..152
e-value: 1.4E-6
score: 27.9
coord: 10..59
e-value: 7.8E-12
score: 44.7
coord: 85..108
e-value: 0.012
score: 15.2
coord: 60..84
e-value: 0.0023
score: 17.6
IPR008974TRAF-likeGENE3D2.60.210.10coord: 171..335
e-value: 2.0E-16
score: 59.8
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 105..155
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 16..87
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 202..333
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 202..333
score: 12.106

Blast
[Close]
BLAST of TCONS_00052608-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.648e-25
Identity = 76/330 (23.03%), Postives = 136/330 (41.21%), Query Frame = 0 
Query:    2 KLFQDKGREREILGIMVKCTNNQSGCKWQNELRQLETHQSECGYE----ETQCVITL-------------------------------------------------CSKRVQRRLLEQHHSEECDYRFVTCLYCTEEYMHYDEEEHIFECEEFLLCC-DFCTESDIPRKKLNDHLSNYCTKVPHSCPFETIGCREKLMLEDLVNHKSKAIEKHLMLALDQIKEQKIELSAKDQRITGLENEVRSRHQQQKLCALNEIHTWELQNFKQNWKADKAS-----FSKCFYSPQ-GYK--INARLGPKKDDQS--VSIWFTTLEGPFDDTLEWPM 267
            K++ D   E ++LG+ ++C +++ GC+W   LR L+ H + C +       +C + L                                                 C  R+ RRLL QH + EC  R   C YCT+E++    + H ++C    + C + C    + R+ L  HL + C      CPF+  GC+ +     +  H  ++++ HL +    +  Q+ EL            E+R R  ++     + +  W++ ++ +  +  KA      FS  FY+ + GYK  ++A L      +   +S++   L G FD+ LEWP 
Sbjct:   65 KIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQEL-----------QELR-RELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPF 382
The following BLAST results are available for this feature:
BLAST of TCONS_00052608-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF45.648e-2523.03TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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