TCONS_00052611-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052611-protein
Unique NameTCONS_00052611-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052611-protein ID=TCONS_00052611-protein|Name=TCONS_00052611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MQSEECGHRFCKTCAANLAKSLNGKKYICPQDRMEVHLFQDRGKEREILG
RLIKCTNNKSGCATNIELRYLDVHLKTCEFQIVKCLFSDCEEKVQRKLLE
KHSLEDCEYRLKSCIFCFEDYSFNMEKEHMCDCSSFPLCCDYCTEIDIPR
NQMQCHVTEKCVKVPTPCEFAPLGCQKQTTIASKESHRIEATQHHLALAL
NKLIEQQDELKQKSDQLFSLRSDHERLKSKLDAQPSISQFKDEHIFHLDN
FAKLFEEAETGEAFTLHMYTSQLHKITISIYFKGYTQDCKDNVSVFFQCT
QGSFDDVAKWPMGGNIDLCVIYVDEEYWNLKLSGESLLSNAFKNPKLNTA
GQRRGWLKVISQNRLVSYVDNDCLCLKIKVNYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033258XLOC_033258Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052611TCONS_00052611Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR018957Znf_C3HC4_RING-type
IPR008974TRAF-like
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 196..216
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 5..38
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 132..194
e-value: 0.016
score: 14.9
coord: 50..104
e-value: 2.2E-12
score: 46.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..49
e-value: 5.3E-5
score: 22.3
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 129..187
e-value: 5.7E-7
score: 30.0
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 73..117
score: 10.421
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 129..178
score: 11.251
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 3..30
e-value: 1.8E-4
score: 21.2
IPR008974TRAF-likeGENE3D2.60.210.10coord: 225..383
e-value: 1.3E-15
score: 57.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 53..130
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 243..381
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 6..15
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 241..380
score: 12.055

Blast
[Close]
BLAST of TCONS_00052611-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.660e-34
Identity = 115/428 (26.87%), Postives = 193/428 (45.09%), Query Frame = 0 
Query:    6 CGHRFCKTCAANLAKSLNGKKYICPQDR---MEVHLFQDRGKEREILGRLIKCTNNKSGCATNIELRYLDVHLKTCEFQIVKCLFSDCEEKVQRKLLEKHSLEDCEYRLKSCIFCFEDYSFNMEKEHMCDCSSFPLCCDYCTEIDIPRNQMQCHVTEKCVKVPTPCEFAPLGCQKQTTIASKESHRIEATQHH---LALALNKL--------IEQQDELKQKSDQLFS--LRSDHE--RLKSKLDAQP--------SISQFKDE------------HIFHLDNFAKLFEEAETGEAFTLH---MYTSQL-HKITISIYFKGYT-QDCKDNVSVFFQCTQGSFDDVAKWPMGGNIDLCVIYVDEEYWNLKLSGESLLSN-----AFKNPKLNTAGQRRGWLKVISQN--RLVSYVDNDCLCLKIKVNYK 383
            CGHRFCK C   + KS+    + CP D    +E  LF D   +REIL  ++KC N   GC   +ELR+L+ H   CEF ++ C    C+   Q+  +  H L+DC  R  SC  C    +F  ++ H  +C    + C+YC  I I R QM  H    C   P PC F+  GC ++        H  E TQ H   LA A++ L        I +    ++   QL    +R DH+   L +K++ Q         +I   +D+            +I+ + NF    +  E  +   +H    YT +  +K+ + ++ +  T Q C + +S+F    QG +D    WP  G I L ++  D+    ++ + E ++       AF+ P +    +  G++  +     R  +++ +D L ++ +V+ +
Sbjct:   85 CGHRFCKAC---IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL--DQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTR 502
The following BLAST results are available for this feature:
BLAST of TCONS_00052611-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF63.660e-3426.87TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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