TCONS_00052623-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052623-protein
Unique NameTCONS_00052623-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052623-protein ID=TCONS_00052623-protein|Name=TCONS_00052623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp
MAENKGGYDVEFLHEQFDDMKCSICLLILREPMQADECGHRFCKSCVVNI
EKSGQKKYICPQDRTKMTLFRDKGREREILNRPVKCIHHKEGCCWAKALR
ELEYHTKECDFEEMVCPFNDCGYKFQRRFLAKHNKEDCLYRTMLCPFCDE
EYSFHLEQDHIEDCDYLPICCDYCQARDIPRYKMETHLIQKCAKAPRQCD
FAHLGCEEQMLMYDIAKHNTNFSDHHINLALQKISAKENIIMEMGQDLER
VQSYNINLRQDIEELRNDNVNLNKQVASQAEEIQRLKTDLQKAKSLNSDQ
NISKITGSTNKSSAFNAQWQAFNQRIANGQRQAAMTQSSASMAQTAAFAP
IPTSSAESTSMLRRPFSLAQIPTRLNFTNFSRANKHTWRVHNFSVEVSKA
IGMNSLMPISKSFYTSLGYRIKVDLYPNLNKFVAIYSATMVGCYDSNLKW
PMEKSQLGLHVLGQEDGKQYVSSFHIETSTCQAFRKPPHLVVPFGCETFL
SHNDFGKAINNDILTIVFDMVQQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033261XLOC_033261Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052623TCONS_00052623Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR018957Znf_C3HC4_RING-type
IPR012227TNF_rcpt--assoc_TRAF
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 248..296
NoneNo IPR availableGENE3D1.20.5.320coord: 256..328
e-value: 1.5E-4
score: 21.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 15..68
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 22..63
e-value: 2.5E-5
score: 33.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 22..64
score: 11.678
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 21..61
e-value: 1.69666E-6
score: 44.3588
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 160..218
e-value: 1.0E-9
score: 38.8
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 105..151
score: 11.417
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 160..210
score: 11.209
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 22..61
e-value: 1.6E-8
score: 34.2
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 2..517
e-value: 9.0E-69
score: 230.4
IPR008974TRAF-likeGENE3D2.60.210.10coord: 386..522
e-value: 2.0E-11
score: 44.1
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 84..148
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 384..520
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 76..126
e-value: 4.1E-11
score: 42.4
coord: 127..149
e-value: 0.0077
score: 15.9
coord: 150..176
e-value: 0.0028
score: 17.3
coord: 177..218
e-value: 2.4E-4
score: 20.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 17..71
e-value: 5.2E-10
score: 38.1
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 38..47

Blast
[Close]
BLAST of TCONS_00052623-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.024e-40
Identity = 134/541 (24.77%), Postives = 239/541 (44.18%), Query Frame = 0 
Query:    5 KGGYDVEFLHEQFDDMKCSICLLILREPMQADECGHRFCKSCVVNIEKSGQKK-YICPQDRTKMTLFRDKGREREILNRPVKCIHHKEGCCWAKALRELEYHTK-ECDFEEMVCPFNDCGYKFQRRFLAKHNKEDCLYRTMLCPFCDEEYSFHLEQDHIE-DCDYLPICCDY-CQARDIPRYKMETHLIQKCAKAPRQCDFAHLGCEEQMLMYDIAKHNTNFSDHHINLALQ-------KISAKENIIMEMGQDLERVQ----SYNINLRQDIEELRNDN---VNLNKQVASQAEEIQRLKTDLQKAKSLNSDQNISKITGSTNKSSAFNAQWQAFNQRIANGQRQAAMTQSSASMAQTAAFAPIPTSSAESTSMLR-RPFSLAQIPTRLNFTNFSRANK-HTWRVHNFSVEVSKAIGMNSLMPISKSFYTS-LGYRIKVDLYPNLNKF-----VAIYSATMVGCYDSNLKWPMEKSQLGLHVLGQEDGKQYVSSFHIETSTCQAFRKPP-HLVVPFGCETFLSHN--DFGKAINNDILTI 516
            +GGY  +F+    D  KC  C L+L  P Q  ECGHRFC+SC+  +  S   K   C +   K  +F+D   +REIL   + C +   GC     L  L  H K +C FEE+ C   DC  K  R+ L  H ++ C YR   C  C  +      Q H + DC  + + C + C  + + R ++  HL  +C  AP  C F   GC  Q     I  H  + +  H+NL  +       K+S  +N  +E  + ++ +     S+ I + +  E LRN+    ++L + + SQAE+++ L            D+ I     +  ++ +  +  ++   R+   +   ++ +S+  +A+      + +  +    ML      LA +  R      +  N    W++ ++     +A+   +L   S+ FYT   GY++   +Y N +       ++++   M G YD+ L WP  K ++ L ++ Q   ++++           +F+KP   + +  GC  F++    + G  I +D + I
Sbjct:   36 QGGYKEKFVKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHL-SECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKEL------------DKEIRPFRQNWEEADSMKSSVESLQNRVTELE---SVDKSAGQVARNTGL--LESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPF-KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFI 556
The following BLAST results are available for this feature:
BLAST of TCONS_00052623-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.024e-4024.77TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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