TCONS_00052628-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052628-protein
Unique NameTCONS_00052628-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052628-protein ID=TCONS_00052628-protein|Name=TCONS_00052628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MDNLGGFDVEFVLEEKDDLKCSICLLVLREPMQAEQCGHRFCKGCVINLP
KSDKKGYICPIDRSKMTLFQDKGREREILDRLIKCVNHTDGCCWTNELRE
LQNHVKNCEYEELVCTMTGCGTKFQRRFFSKHNEEDCVCRMMSCPFCFE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033262XLOC_033262Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052628TCONS_00052628Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 21..62
e-value: 9.4E-6
score: 35.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 21..63
score: 11.766
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 20..61
e-value: 7.38234E-4
score: 33.5732
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 75..121
e-value: 2.7E-10
score: 39.8
coord: 122..149
e-value: 0.2
score: 11.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 16..72
e-value: 2.3E-11
score: 42.5
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 20..61
e-value: 1.7E-8
score: 34.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 13..87
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 37..46
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 104..147
score: 10.743
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 83..147

Blast
[Close]
BLAST of TCONS_00052628-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.173e-23
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = 0 
Query:    1 MDNLGGFDVEFVLEEKDDLKCSICLLVLREPMQAEQCGHRFCKGCVINLPKSDKKGYICPIDRSKM---TLFQDKGREREILDRLIKCVNHTDGCCWTNELRELQNHVKNCEYEELVCTMTGCGTKFQRRFFSKHNEEDCVCRMMSCPFC 147
            M+ + G+DVEF    +   +C ICL+ LRE +Q   CGHRFCK C+I   +    G+ CP+D   +    LF D   +REIL  ++KC N  +GC    ELR L++H  +CE+  + C    C   FQ+   + H  +DC  R +SC  C
Sbjct:   50 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNC 192
The following BLAST results are available for this feature:
BLAST of TCONS_00052628-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF69.173e-2338.00TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
back to top