TCONS_00052667-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052667-protein
Unique NameTCONS_00052667-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052667-protein ID=TCONS_00052667-protein|Name=TCONS_00052667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MAMREDIAQWCSLTESRVRIWFKNRRAKWRKKERHLEQRPDMFPDFSSPY
RLEPPSIYDRRVPMPSYTPTYPTHTPPLIGASSSRSPPLPHNYQQSSHSW
YNSPDHSANHNLSGPGLSQRHSPPYNPTGGLYNYQDPIRNNYLSTCPQQT
VSTPQIGNRDNDLVSPISLSPRTPTHTFSPQGGNFHM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033274XLOC_033274Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052667TCONS_00052667Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 1..42
e-value: 5.8E-13
score: 48.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..187
NoneNo IPR availableCDDcd00086homeodomaincoord: 2..33
e-value: 5.40834E-11
score: 53.7865
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 3..31
e-value: 3.0E-10
score: 39.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..32
score: 12.276
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 7..30
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 2..35

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052667-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top