TCONS_00052696-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052696-protein
Unique NameTCONS_00052696-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052696-protein ID=TCONS_00052696-protein|Name=TCONS_00052696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp
SYAPIGVASETEWENFLDCLDLCISKKKPHDILIIGSDTNSSLGCSTQLD
DGYSIGKFGLKHCNESGRRFSSYLAINNFLATTTCFQKNNYATWIHPRSK
MKHQIDHFITKKENFKHVMDAGVTLPLIDSDHTAIKCILRFIVRLKKKSS
PRERLVKLDYTRLKIVSERNRFCAKVKNLYDENTSIDNSYSKAADAIMKV
SHEMLPRAKKPSPGWFQAAQNKLLPLIEQRNKALMRKINRPLRSTTQRLH
TARKSLKNAVSKAKNEWIVSHCNELNNVTKGGTKRFWDTVNKLKSGLTKV
KTSNERAMKKPNGQLCTTPEENATVFQSHFQQLYERQPDFDASVLSSLVS
KKTVENLDYHPDGDEIRKAVRNLKERAPGDSGITPQVWKALVENESTFKI
LQTIVIDFWDSEKPPSEWDTGLLKILPKKGDLSLPGNYRGIMLLESAYKI
IAIILHNRLSPIVESLDHEPQCGFRPGRGCVDGIFTVKMAMKKRREHGLE
TWILFLDLVKAFDRVPRELLWEVLDIFGVPAKLIRLLKALHANVEVKFVV
NDITKRIDSIIGVKQGDILG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033300XLOC_033300Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052696TCONS_00052696Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR005135Endo/exonuclease/phosphatase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 427..569
e-value: 5.5E-25
score: 88.1
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 407..570
score: 11.172
IPR005135Endonuclease/exonuclease/phosphataseGENE3D3.60.10.10coord: 6..140
e-value: 1.2E-4
score: 21.0
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 6..139
NoneNo IPR availableGENE3D3.30.70.270coord: 448..570
e-value: 3.9E-7
score: 29.4
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 420..530
e-value: 4.21339E-32
score: 122.015
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 376..568

Blast
[Close]
BLAST of TCONS_00052696-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.423e-17
Identity = 108/480 (22.50%), Postives = 200/480 (41.67%), Query Frame = 0 
Query:  104 QIDHFITKKENFKHVMDAGVTLPLIDSDHTAIKCILRFIVRLKKKSSPRERLVKLDYTRLKIVSERNRFCAKVKNLYDENTSIDNSYSKAADAIMKVSHEMLPRAKKPSPGWFQAAQNKLLPLIEQRNKALMRKINRPLRSTTQRLHTARKSLKNAVSKAKNEWIVSHCNELNNVTKGGTKR--------FWDTVNKLKSGLTK-VKTSNER----AMKKPNGQLCTTPEENATVFQSHFQQLY-------ERQPDFDASVLSSLVSKKTVENLDYHPDGDEIRKAVRNL-KERAPGDSGITPQVWKALVENESTF--KILQTIVIDFWDSEK----PPSEWDTGLLKILPKKG-DLSLPGNYRGIMLLESAYKIIAIILHNRLSPIVESLDHEPQCGFRPGRGCVDGIFTVKMAMKK----RREHGLETWILFLDLVKAFDRVPRELLWEVLDIFGVPAKLIRLLKALHANVEVKFVVN 551
            +IDH +  K          +    + SDH+AIK  LR    +K  +  R    KL+   L      N   A++K  ++ N + D +Y    DA   V                   + K + L   + K    KI+    + T +L    K  +     ++ + I     EL  +    T +        F++ +NK+   L + +K   E+     +K   G + T P E  T  + +++ LY       E    F  +     ++++ VE+L+    G EI   + +L  +++PG  G T + ++   E    F  K+ Q+I       EK    P S ++  ++ ++PK G D +   N+R I L+    KI+  IL NR+   ++ L H  Q GF PG   + G F ++ ++       R       I+ +D  KAFD++ +  + + L+  G+    +++++A++       ++N
Sbjct:  203 KIDHIVGSKALLSKCKRTEIITNYL-SDHSAIKLELR----IKNLTQSRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDAFKAV------------------CRGKFIALNAYKRKQERSKID----TLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSI-------EKEGILPNSFYEASII-LIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPG---MQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILN 644
The following BLAST results are available for this feature:
BLAST of TCONS_00052696-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF27.423e-1722.50LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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