TCONS_00052801-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052801-protein
Unique NameTCONS_00052801-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052801-protein ID=TCONS_00052801-protein|Name=TCONS_00052801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=544bp
LGLNNTIQHYNSKQKGSKIKKMTDLTLLQTFGQSFPEEFDGSLDSVSPAL
TSAFNRTGSLLAVGCNDGRLVIWDFLTRGVAKVMVAHIHPVSSVSWSHDG
KQILTSSTDWSVGLWDVLSGNCETRYRFPSAIHKVQFHPRNSKLFLVCPL
KHAPVLVDVDKKHHILPVGGECEQNIVAAFDKKGEYIFTGNAKGKITVIK
TDTLKEVTSFRISTATNANTAIKSIEFSRRGSSFLVNSQDRVIRVFDRDD
VIAYKGGKEPEATQKLQDLVNKTLWKKCAFSGDGEFIVAGSSRQHALYIW
ERTIGSLVKILHGTKGELLVDVVWHPIRSIICSVANGLVSIWSQTHVENW
SAFAPDFKEIDENIEYEERESEFDLEDEDKEELLNTNQDLTEESEIDVES
VERPLFYSSGDEPDDDCLYYLPVAPEIDEPEGEMTHGYDTGKNGGNLGNG
KEAGSNKSEESDSSGPPAKKTKTKDININGDGYDPKAVLSEKPIEKQRSR
GGQNTSRGKRSGKKGTQSKGKRQASRILDTEDENSQDMSDSAVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033371XLOC_033371Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052801TCONS_00052801Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 373..393
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..544
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 36..74
e-value: 0.13
score: 21.3
coord: 262..301
e-value: 140.0
score: 3.4
coord: 77..116
e-value: 6.2E-6
score: 35.7
coord: 304..343
e-value: 13.0
score: 9.9
coord: 203..247
e-value: 0.55
score: 18.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 86..116
e-value: 0.021
score: 15.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 84..125
score: 13.416
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 268..542
e-value: 2.4E-10
score: 38.9
coord: 44..267
e-value: 4.4E-36
score: 123.6
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 103..117
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 42..125
score: 17.166
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 47..346

Blast
[Close]
BLAST of TCONS_00052801-protein vs. Swiss-Prot (Human)
Match: RBBP5 (Retinoblastoma-binding protein 5 OS=Homo sapiens GN=RBBP5 PE=1 SV=2)

HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 266/460 (57.83%), Postives = 346/460 (75.22%), Query Frame = 0 
Query:   24 DLTLLQTFGQSFPEEFDGSLDSVSPALTSAFNRTGSLLAVGCNDGRLVIWDFLTRGVAKVMVAHIHPVSSVSWSHDGKQILTSSTDWSVGLWDVLSGNCETRYRFPSAIHKVQFHPRNSKLFLVCPLKHAPVLVDV-DKKHHILPVGGECEQNIVAAFDKKGEYIFTGNAKGKITVIKTDTLKEVTSFRISTATNANTAIKSIEFSRRGSSFLVNSQDRVIRVFDRDDVIAYKGGKEPEATQKLQDLVNKTLWKKCAFSGDGEFIVAGSSRQHALYIWERTIGSLVKILHGTKGELLVDVVWHPIRSIICSVANGLVSIWSQTHVENWSAFAPDFKEIDENIEYEERESEFDLEDEDKEELLNTNQDLTEESEIDVESVERPLFYSSGDE--PDDDCLYYLPVAPEIDEPEGEMTHGYDTGKNGGNLGNGKEAGSNKSEESDSSGPPAKKTKTKDINING 480
            +L LL++FGQ++PEE DG+LD +S ALT  FNR G+LLAVGCNDGR+VIWDFLTRG+AK++ AHIHPV S+ WS DG +++++STD  V  WDVLSG+C+ R+RFPS I KVQ+HPR+    LVCP+K APV++ + D KH +LPV  + + N+VA+FD++GEYI+TGNAKGKI V+KTD+   V SFR++T T+  TAIKSIEF+R+GS FL+N+ DR+IRV+D  +++      EPE  QKLQDLVN+T WKKC FSGDGE+IVAGS+RQHALYIWE++IG+LVKILHGT+GELL+DV WHP+R II S+++G+VSIW+Q  VENWSAFAPDFKE+DEN+EYEERESEFD+EDEDK E   T  D  E+ E+DV SV+    + S DE   D   L YLP+APE+++PE               +  G  +   +   +D S PP KK KT +I + G
Sbjct:    2 NLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQG 461
The following BLAST results are available for this feature:
BLAST of TCONS_00052801-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBBP50.000e+057.83Retinoblastoma-binding protein 5 OS=Homo sapiens G... [more]
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