TCONS_00052833-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052833-protein
Unique NameTCONS_00052833-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052833-protein ID=TCONS_00052833-protein|Name=TCONS_00052833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
NLSPLLFAPTITSFHRNAAVVDEKPSFSKIILLSTMADGNQGDQQCSFGI
KKIVDCKIDQTGKQLYKVKWEATWEPADSLSSCQHLIDEFWGFVNKAKTN
EDIAQQHRKRMRLDPSAGQNGTVGLGPHHMLSEDSKDEVQRLIARTNATQ
PGSLMTPSDLLNTQQNQMGVPRTPTRAPQSPFAQNTRMPFSQSPGQFNQQ
QQQFGSPQTGFPNQSPMSSPSTRGKAPGFGKPASNIKSEQDESERKRKLS
TPSTLSSTTNNSNNPFENWDNPYVIVRFHCRICDKELPNKNYWKTHNGLH
ANNHKCNICGRSFGTSSNLKRHEKTHLKKEGVKQETPSATTSMMDVKKEF
YQTPPTHQNAGSFVKSEQPYFGDWNNM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033387XLOC_033387Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052833TCONS_00052833Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR023780Chromo_domain
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 278..300
e-value: 1.4
score: 17.9
coord: 304..326
e-value: 1.9E-4
score: 30.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 306..326
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 304..331
score: 12.986
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 278..326
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 304..326
e-value: 4.7E-6
score: 26.7
NoneNo IPR availableGENE3D3.30.160.60coord: 318..371
e-value: 5.6E-8
score: 32.3
NoneNo IPR availableGENE3D2.40.50.40coord: 49..112
e-value: 1.1E-8
score: 34.4
NoneNo IPR availableGENE3D2.10.69.10coord: 291..317
e-value: 1.8E-10
score: 40.3
NoneNo IPR availableGENE3D3.30.160.60coord: 153..290
e-value: 0.48
score: 10.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..268
NoneNo IPR availableCDDcd00024CHROMOcoord: 47..91
e-value: 3.26632E-8
score: 48.7995
IPR023780Chromo domainPFAMPF00385Chromocoord: 50..91
e-value: 2.0E-7
score: 30.7
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 48..90
score: 8.757
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 48..95

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052833-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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