TCONS_00052864-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052864-protein
Unique NameTCONS_00052864-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052864-protein ID=TCONS_00052864-protein|Name=TCONS_00052864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
MTDDQIVIKYEESFTNNNNNLNNEGSSSQSERSPSSPLGLSELESSTTLG
NIAQNVNPNDKMAIYQHPLFPLLRLLFEKCESATKSIDNADSLCFEAEMK
AYITEMAKVNKPFFTDNVEVDTLMLKSLQVLAIHLLELGKVNELCKDFCT
RYISCLKGKLNSENIMRTLDIQNTPPGSPTSPKNPTQPMSDVTMVGSTID
ASILAPPKTPTAVPVNGRSSSTSSLENNNTTLKEDFSIHRSMSVDTPSFI
GAAGLATPMSPEQLTGFLTKKNKGGKRGTLPKVATNVLKAWLFQHLVHPY
PSEEEKKQLAVQTNLSILQVNNWFINARRRIIQPMLDSSSTVLKNNKKPK
QPRNAAQKGWASTMEELSTTNRPGPLSPPAQQPVRYMMSPVTSSAPGPVL
LNLGAQSTNQPSTTQSMLMSPVQFVQVNQIPSMQSIQAATGYLPPHTAST
QTSFPSTTNANSVETSSKDT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033395XLOC_033395Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052864TCONS_00052864Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR032453PKNOX/Meis_N
IPR008422Homeobox_KN_domain
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 273..338
e-value: 4.3E-11
score: 52.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 271..334
score: 12.293
IPR032453Homeobox protein PKNOX/Meis, N-terminalPFAMPF16493Meis_PKNOX_Ncoord: 88..168
e-value: 3.8E-28
score: 97.6
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 291..330
e-value: 1.7E-20
score: 72.5
NoneNo IPR availableGENE3D1.10.10.60coord: 270..337
e-value: 3.8E-19
score: 67.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..228
NoneNo IPR availableCDDcd00086homeodomaincoord: 276..330
e-value: 8.96061E-14
score: 65.3424
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 273..339

Blast
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BLAST of TCONS_00052864-protein vs. Swiss-Prot (Human)
Match: PKNX1 (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 2.320e-70
Identity = 136/319 (42.63%), Postives = 188/319 (58.93%), Query Frame = 0 
Query:   60 DKMAIYQHPLFPLLRLLFEKCESATKSIDNADSLCFEAEMKAYITEMAKVNKPFFTDNVEVDTLMLKSLQVLAIHLLELGKVNELCKDFCTRYISCLKGKLNSENIMRTLDIQNTPPGSPTSPKNPTQPMSDVTMVGSTIDASILAPPKTPTAVPVNGRSSSTSSLENNNTTLK--EDFSIHRSMSVDTPSFIGAAGLATPMSPEQL-------------TGFLTKKNKGG---KRGTLPKVATNVLKAWLFQHLVHPYPSEEEKKQLAVQTNLSILQVNNWFINARRRIIQPMLDSSSTVLKNNKKPKQPRNAAQKGW 360
            DK AIY+HPLFPLL LLFEKCE +T+  +   S  F+ +++ ++ +  K  KPFF ++ E D LM+K++QVL IHLLEL KVNELCKDFC+RYI+CLK K+NSE ++      +  PGSP SP    Q  S +T  G+     I+ P                S+L+  N  +      ++++ ++V TP       +   +SP  +                +  ++ G    KRG LPK ATNV+++WLFQH+ HPYP+E+EKKQ+A QTNL++LQVNNWFINARRRI+QPMLDSS +     KK        Q+ W
Sbjct:   54 DKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLL------SGEPGSPYSPVQSQQIQSAIT--GTISPQGIVVP---------------ASALQQGNVAMATVAGGTVYQPVTVVTPQ---GQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFW 346
The following BLAST results are available for this feature:
BLAST of TCONS_00052864-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKNX12.320e-7042.63Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 ... [more]
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