TCONS_00052865-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052865-protein
Unique NameTCONS_00052865-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052865-protein ID=TCONS_00052865-protein|Name=TCONS_00052865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MPNLRSRKRTQEELTHQEKGTLEDGNTTNATMAKKMTVDEINQWVMIGPE
NLFINDEDLSLHKLPHPQNGVASLFAFKNKQVFELMKYKDTYRSWFINQT
VQKDGSFCMLTPIDPLFLALPFIEKSSIKGQFTTLDNIMVDTDHTPGLRQ
LECCLTHNMLLNVCDTKGADDIIVYKSNQEKITKWLSQKITTMAKYLESS
KINVKQGAQISGYNRSSEGQNNKESSLRYAWEMVSDYITEDRSLQLKENF
GIKDPVKTVKTEEKLDPPQAKKQKLNNDPDANCLEDYRNKDAPKKKNTGT
TKLSRAQKQLDKVDKKGMKTMSSFFAVKPKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033396XLOC_033396Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052865TCONS_00052865Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019024RNase_H2_suB
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019024Ribonuclease H2, subunit BPFAMPF09468RNase_H2-Ydr279coord: 45..325
e-value: 2.1E-52
score: 178.5
IPR019024Ribonuclease H2, subunit BCDDcd09270RNase_H2-Bcoord: 45..325
e-value: 2.19858E-35
score: 127.806
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..332

Blast
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BLAST of TCONS_00052865-protein vs. Swiss-Prot (Human)
Match: RNH2B (Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.159e-36
Identity = 96/283 (33.92%), Postives = 154/283 (54.42%), Query Frame = 0 
Query:   59 LSLHKLPHPQNGVASLFAFKN--KQVFELMKYKDTYRSWFINQTVQKDGSFCMLTPIDPLFLALPFIEKSSIKGQFTTLDNIMVDTDHTPGLRQLECCLTHNMLLNVCDTKG---ADDIIVYKSNQEKITKWLSQKITTMAKYLESSKINVKQGAQISGYNRSSEGQNNKESS-LRYAWEMVSDYITEDRSLQLKENFGIKDPVKTVKTEEKLDPPQAKKQKLNNDPDANCLEDY---RNKDAPKKKNTGTTKLSRAQKQLDKVDKKGMKTMSSFFAVKPKKK 332
            L   KL +P +G  +++ F    +Q+FE+  +K+ + SWFINQ+VQ  G     TP+DPLFL L ++ K+  +G+F  LD ++VD      +  L+      +L +V + KG    D+   YK ++EK  KWL +K+      L+++ +NV    Q + +    +   +KE   +RYA  ++SDYI ++ S  L +   + +P  +      L  P +KK KL+++P     EDY     KD   +K    +K++ AQK L KVDK GMK++ +FF VK KKK
Sbjct:   35 LMFVKLVNPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS------LPNPPSKKIKLSDEP-VEAKEDYTKFNTKDLKTEKK--NSKMTAAQKALAKVDKSGMKSIDTFFGVKNKKK 308
The following BLAST results are available for this feature:
BLAST of TCONS_00052865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNH2B1.159e-3633.92Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASE... [more]
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