TCONS_00053063-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053063-protein
Unique Name	TCONS_00053063-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	218

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053063-protein ID=TCONS_00053063-protein|Name=TCONS_00053063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
KNMAQNETVTLECIRKEIGDENLPVKGVMFGGDGAVGKTSMYLYYFLEKK
EPKYIPVKVETDYGPKIYKYKKTGEKVGIYYDDHEGGGEDWDRLRHLGYE
RADVVVLCFSIGSRKSFDNIEEYWYPFVQKHASKAPIVLCGTQTDMRTDQ
FYLDRLAEHNQKPITNVEGKKLAQKIKAVGYFECSSVEGRGVKELFDAAA
EATHPDITKTKSEECSVM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033516	XLOC_033516	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053063	TCONS_00053063	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR003578	Small_GTPase_Rho
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0003924	GTPase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 181..203 score: 27.54 coord: 26..47 score: 30.05 coord: 133..146 score: 32.26
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 28..206 e-value: 4.2E-5 score: -46.0
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 28..206 e-value: 1.1E-34 score: 131.3
None	No IPR available	GENE3D	3.40.50.300		coord: 102..207 e-value: 2.4E-24 score: 84.9
None	No IPR available	CDD	cd00157	Rho	coord: 32..202 e-value: 1.05785E-50 score: 163.484
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 32..202 e-value: 5.2E-26 score: 91.1
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 29..184 e-value: 9.5E-13 score: 46.2
IPR003578	Small GTPase superfamily, Rho type	PROSITE	PS51420	RHO	coord: 18..203 score: 14.353
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 28..202

Blast

[Close]

BLAST of TCONS_00053063-protein vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 6.817e-40
Identity = 74/187 (39.57%), Postives = 107/187 (57.22%), Query Frame = 0

Query:   32 GDGAVGKTSMYLYYFLEKKEPKYIPVKVETDYGPKIYKYKKTGEKVGIYYDDHEGGGEDWDRLRHLGYERADVVVLCFSIGSRKSFDNIEEYWYPFVQKHASKAPIVLCGTQTDMRTDQFYLDRLAEHNQKPITNVEGKKLAQKIKAVGYFECSSVEGRGVKELFDAAAEATHPDITKTKSEECSVM 218
            GDGAVGKT + + Y   K   +Y+P  V  +Y   +      GE   +   D   G ED+DRLR L Y + DV ++CFS+ S  SF+N++E W P +  H  K P +L GTQ D+R D   +++LA++ QKPIT    +KLA+ +KAV Y ECS++  +G+K +FD A  A        KS  C ++
Sbjct:   10 GDGAVGKTCLLISYTTNKFPSEYVPT-VFDNYAVTVMI---GGEPYTLGLFD-TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL 191

The following BLAST results are available for this feature:

BLAST of TCONS_00053063-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053063-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC42	6.817e-40	39.57	Cell division control protein 42 homolog OS=Homo s...	[more]

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TCONS_00053063-protein (polypeptide) - C. hemisphaerica