TCONS_00053113-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053113-protein
Unique NameTCONS_00053113-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length936

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053113-protein ID=TCONS_00053113-protein|Name=TCONS_00053113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=936bp
MAPVAETKLPTKNEENKEKKDVDSKKDDKKAKEEAEMSEEDKQLLDELNM
LVQRLKESNVSLHKPALESLRTQIRSSTSSMTSVPKPLKFLREHFEGLKE
LHKTWQESENKHFLADIVSVLGMTKPEVRDCLKYRFLGSHEPLESWGHEY
VRHLAEEIRCEYAEREEGKTEDLIKLSSEIIPYDMKHNAEIDACDLAMEI
ERLDLLEKYVDKSTFQRVCLYLSSCVKYVPEPEDAKLLKCALQIFLKYEC
YPEALNLAIQLNDLDIIKDIFKASAGKDDQKLVQKQLGYILGRLQIFLEL
DEEAEEVEDLAEIVSNSHLNNSFLALARELDIMEPKVPEDIYKSHLDNKP
FSSQSVSMDSARQNLASSFVNGFVNTAFGKDKLLTEDGNKWLYKNKEHGM
LSTAASLGMLLLWDVDGGLTQIDKYLYSNEDYIKAGALLACGIVNSGVRN
ECDPALALLSDYIEHSNSIMQVGSILGLGLAYAGSNREDVLSLILPVMSD
SKSTMEVVGVSALACGMIAIASSNGEVTSVILQTIMERSALELKDHFAKY
LSLGLGLTYLGKQEEVDATIETLKVVQGPFSQWARVMVDVCAYAGTGNVL
KVQNLLHICSEHYDNEKDGDKKEDDKKDAKKENKDTKKDDGKKTEGDSTA
KDSKKEEDKKEEKTEDEDRDGSHQGVAVLGIAAIAMGEDIGSEMVLRTYN
HLLQYGEPAIRRAVPLGLALLSASNPKLQVIDILSKFSHDHDSEVAHNAI
FAMGIVGAGSNNARLAGMLRQLALYYHKDANNLFMVRIAQGLIHLGKGTL
TVSPYQYDRTYMSPVAVGGLLATLTAFFDVKQTILGKSHYLLYSLVSAMQ
PRMLVTLDTELKPLPVHVRVGQAVDVVGQAGKPKSITGFQTHTTPVLLAH
GERAELATEEFIAMTPVLEGFVVCKKNPEYDPDEMH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033545XLOC_033545Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053113TCONS_00053113Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR002015Proteasome/cyclosome_rpt
IPR01664326S_Psome_Rpn1
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0000502proteasome complex
Vocabulary: Biological Process
TermDefinition
GO:0042176regulation of protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042176 regulation of protein catabolic process
cellular_component GO:0000502 proteasome complex
molecular_function GO:0005488 binding
molecular_function GO:0030234 enzyme regulator activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 619..639
NoneNo IPR availableCOILSCoilCoilcoord: 38..58
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 614..672
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 25..790
e-value: 4.5E-26
score: 90.3
IPR002015Proteasome/cyclosome repeatPFAMPF01851PC_repcoord: 436..470
e-value: 9.8E-6
score: 25.7
coord: 473..505
e-value: 1.7E-7
score: 31.2
IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitPIRSFPIRSF01596526S_protsm_Rpn1coord: 1..935
e-value: 0.0
score: 1348.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 204..300
coord: 40..92
coord: 662..797
coord: 395..574

Blast
[Close]
BLAST of TCONS_00053113-protein vs. Swiss-Prot (Human)
Match: PSMD2 (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 1213.75 bits (3139), Expect = 0.000e+0
Identity = 598/934 (64.03%), Postives = 728/934 (77.94%), Query Frame = 0 
Query:    2 APVAETKLPTKNEENKEKKDVDSKKDDKKAKE-EAEMSEEDKQLLDELNMLVQRLKESNVSLHKPALESLRTQIRSSTSSMTSVPKPLKFLREHFEGLKELHKTWQESENKHFLADIVSVLGMTKPEVRDCLKYRFLGSHEPLESWGHEYVRHLAEEIRCEYAE---REEGKTEDLIKLSSEIIPYDMKHNAEIDACDLAMEIERLDLLEKYVDKSTFQRVCLYLSSCVKYVPEPEDAKLLKCALQIFLKYECYPEALNLAIQLNDLDIIKDIFKASAGKDDQKLVQKQLGYILGRLQIFLELDEEAEEVEDLAEIVSNSHLNNSFLALARELDIMEPKVPEDIYKSHLDNKPFSSQSVSMDSARQNLASSFVNGFVNTAFGKDKLLTEDGNKWLYKNKEHGMLSTAASLGMLLLWDVDGGLTQIDKYLYSNEDYIKAGALLACGIVNSGVRNECDPALALLSDYIEHSNSIMQVGSILGLGLAYAGSNREDVLSLILPVMSDSKSTMEVVGVSALACGMIAIASSNGEVTSVILQTIMERSALELKDHFAKYLSLGLGLTYLGKQEEVDATIETLKVVQGPFSQWARVMVDVCAYAGTGNVLKVQNLLHICSEHYDNEKDGDKKEDDKKDAKKENKDTKKDDGKKTEGDSTAKDSKKEEDKKEEKTEDEDRDGSHQGVAVLGIAAIAMGEDIGSEMVLRTYNHLLQYGEPAIRRAVPLGLALLSASNPKLQVIDILSKFSHDHDSEVAHNAIFAMGIVGAGSNNARLAGMLRQLALYYHKDANNLFMVRIAQGLIHLGKGTLTVSPYQYDRTYMSPVAVGGLLATLTAFFDVKQTILGKSHYLLYSLVSAMQPRMLVTLDTELKPLPVHVRVGQAVDVVGQAGKPKSITGFQTHTTPVLLAHGERAELATEEFIAMTPVLEGFVVCKKNPEYD 931
            APV   + P       ++K    ++ D   K+ E E+SEEDKQL DEL MLV+RL E + SL++PALE LR QIRSST+SMTSVPKPLKFLR H+  LKE+++     ENK F ADI+SVL MT    R+CLKYR +GS E L SWGHEYVRHLA E+  E+ E    E+ + E L+ L  EI+PY+M HNAE +ACDL MEIE++D+LEK +D++ + +VCLYL+SCV YVPEPE++ LL+CAL +F K+  +PEAL LA+ LND+++++DIF  ++ KD   +VQKQ+ ++LGR  +FLEL E+ EE EDL EI+SN  LN++FLALARELDIMEPKVP+DIYK+HL+N  F      +DSAR NLASSFVNGFVN AFG+DKLLT+DGNKWLYKNK+HGMLS AASLGM+LLWDVDGGLTQIDKYLYS+EDYIK+GALLACGIVNSGVRNECDPALALLSDY+ H+++ M++GSI GLGLAYAGSNREDVL+L+LPVM DSKS+MEV GV+ALACGMIA+ S NG+VTS ILQTIME+S  ELKD +A++L LGLGL +LGK E ++A +  L+VV  PF  +A  +VDVCAYAG+GNVLKVQ LLHICSEH+              D+K++ +D  K + K  +      D                  G+HQGVAVLGIA IAMGE+IG+EM LRT+ HLL+YGEP +RRAVPL LAL+S SNP+L ++D LSKFSHD D EV++N+IFAMG+VG+G+NNARLA MLRQLA Y+ KD NNLFMVR+AQGL HLGKGTLT+ PY  DR  MS VAV GLL  L +F DV+  ILGKSHY+LY LV+AMQPRMLVT D EL+PLPV VRVGQAVDVVGQAGKPK+ITGFQTHTTPVLLAHGERAELATEEF+ +TP+LEGFV+ +KNP YD
Sbjct:    9 APVQPQQSPAAAPGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIF--TSCKD--VVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHF--------------DSKEKEEDKDKKEKKDKDKKEAPADM-----------------GAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNYD 907
The following BLAST results are available for this feature:
BLAST of TCONS_00053113-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD20.000e+064.0326S proteasome non-ATPase regulatory subunit 2 OS=... [more]
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