TCONS_00053272-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053272-protein
Unique NameTCONS_00053272-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053272-protein ID=TCONS_00053272-protein|Name=TCONS_00053272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MGNSSGKDSVPIKQDIDDGEDLLDLSGPCKVKNIHIDGLKKSRNELVTTT
LEDLFKANTFEDVITKAHLCKLKLERLRVFSNIDVFIDVADEYSDQHEFD
VFYLVKESRSFQASVGTTVGNNEGNMVVTGAVSNLKGTGELVKANISYGT
AQTTSYEFSMGKPIGYDPDRRLSFKVLKSISDLSQSFYKDTTKGLGLDFT
IPSSIGLHTLGWDFNWRENSVLPSAPFEVREFSGHSLKSTLKHSFVSDGR
DDWVLPSHGHLFKHSIEVSDFIGNVRAWKSNVELQLNKEIFDRVVLAGSF
QAGVTQSLDDKPLMINDRFFIGGPSSIRGYKFKGIGYQAEVDGINSAALG
GDLFWMSGLHVYTPLPFLNSGKDSFGSLFRMHYFLNAGNLTNMNQMNAKD
FVMNPRWSYGLGIMFMLGGMARLEINYCLPKNGRPGDQISEGFQVGVGLN
FL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033631XLOC_033631Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053272TCONS_00053272Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000184Bac_surfAg_D15
Vocabulary: Cellular Component
TermDefinition
GO:0019867outer membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0019867 outer membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.160.50coord: 66..451
e-value: 1.4E-46
score: 159.0
IPR000184Bacterial surface antigen (D15)PFAMPF01103Bac_surface_Agcoord: 134..451
e-value: 1.7E-50
score: 172.3

Blast
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BLAST of TCONS_00053272-protein vs. Swiss-Prot (Human)
Match: SAM50 (Sorting and assembly machinery component 50 homolog OS=Homo sapiens GN=SAMM50 PE=1 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 5.669e-102
Identity = 178/448 (39.73%), Postives = 260/448 (58.04%), Query Frame = 0 
Query:   13 KQDIDDGEDLLDLSGPCKVKNIHIDGLKKSRNELVTTTLEDLFKANTFEDVITKAHLCKLKLERLRVFSNIDVFIDVAD-EYSDQHEFDVFYLVKESRSFQASVGTTVGNNEGNMVVTGAVSNLKGTGELVKANISYGTAQTTSYEFSMGKPIGYDPDRRLSFKVLKSISDLSQSFYKDTTKGLGLDFTIPSSIGLHTLGWDFNWRENSVLP-SAPFEVREFSGHSLKSTLKHSFVSDGRDDWVLPSHGHLFKHSIEVSDFIG-NVRAWKSNVELQLNKEIFDRVVLAGSFQAGVTQSLDDKPLMINDRFFIGGPSSIRGYKFKGIGYQAEVDGINSAALGGDLFWMSGLHVYTPLPFLNSGKDSFGSLFRMHYFLNAGNLTNMN-----QMNAKDFVMNPRWSYGLGIMFMLGGMARLEINYCLPKNGRPGDQISEGFQVGVGLNFL 452
            KQ+I + +D++       V+++H DGL +++++++   + D+FKA    +V+ K+H  + KL RL +F  +DV ID    + +  +  DV + V E R    S  T VGNNEG+MV+   + NL G  E V    SYGT +T SY  S  KP   + +R  S  + K       S  ++T +G+  +++ P     HT+ W+  WRE   L  +A F VR+ SGHSLKS+L H+ V D R+  +LP  G L K + E++ + G +V   K + ELQLNK++    V + SF  G+   + DKP  I DRF++GGP+SIRG+    IG Q+E D      LGG+ +W  GLH+YTPLPF   G+  FG LFR H+FLNAGNL N+N     + + +      RWSYG GI+  LG +ARLE+NYC+P   + GD+I +G Q G G+ FL
Sbjct:   36 KQEILENKDVV-------VQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKET-SYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGD-----YLGGEAYWAGGLHLYTPLPF-RPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRFL 469
The following BLAST results are available for this feature:
BLAST of TCONS_00053272-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAM505.669e-10239.73Sorting and assembly machinery component 50 homolo... [more]
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