TCONS_00053313-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053313-protein
Unique NameTCONS_00053313-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053313-protein ID=TCONS_00053313-protein|Name=TCONS_00053313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
MELKLPWLLVVCFGCLSVYNFLRDLEADSRFISLEEKSADHHGRHRRDTG
TENWQNILNLDTLKEFVQKHSNETFQREITHVLGQLMLNFPADKLCKNFM
IRCGKEKCTEEKVVIAGDQEIGNKGKTKCIRGPPGPQGPPGPRGPKGSKG
LGLEPPKLVQNSLGDRVVNLTDSTTFECTFFGNPIPTISWRSVANNGRVS
STVDKEKSEITTQLTLKNISWNDQGPVECRAKSLLGEDYGSGNLSTLSEP
VIHMTETLVFAPNGVNFQLPECKVRSNPTATVTWKRIFWSMPVGRFNVQE
NKLMINNVRYSDEGFYVCEAENYLGKDKKTVQLKVKAFEMYHSSPSYIAS
MTTDTTNVTCSAYGNTKEMTGTISKSGRNIPVVIEKREDNLFVVAAEVSE
DGTYVCTIKYDKEKVESASVVEFFTLQSKILNSTQIETIRSWLDEAGKLG
KYEPCFTLSTPSTNFYQPSYCGDKSNTISLMQVKDKLRYGRDRYGRYRYD
WGSIYGGFTDIPWNRYSSRASNSTFIFDLNQMEKYPLRDTAYARSNAVCY
YNGYGPCFGSTDLYVRSGSLGNKGRWVFQDVPSIQTSREVRMEVFYKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033648XLOC_033648Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053313TCONS_00053313Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 169..236
e-value: 0.0067
score: 25.6
coord: 262..325
e-value: 3.3E-5
score: 33.3
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 163..247
e-value: 4.2E-4
score: 29.7
coord: 345..423
e-value: 20.0
score: 8.9
coord: 256..336
e-value: 9.8E-6
score: 35.1
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 307..364
e-value: 2.7E-7
score: 30.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 365..422
e-value: 0.055
score: 13.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 247..306
e-value: 5.1E-8
score: 32.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 154..246
e-value: 1.8E-11
score: 43.6
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 271..335
e-value: 6.0E-10
score: 39.0
coord: 162..238
e-value: 1.2E-9
score: 38.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..155
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 156..248
score: 10.099
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 250..336
score: 9.773
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 271..337
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 154..244

Blast
[Close]
BLAST of TCONS_00053313-protein vs. Swiss-Prot (Human)
Match: CNTN5 (Contactin-5 OS=Homo sapiens GN=CNTN5 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.190e-16
Identity = 75/247 (30.36%), Postives = 113/247 (45.75%), Query Frame = 0 
Query:  176 FECTFFGNPIPTISWRSVANNGRVSSTVDKEKSEITTQLTLKNISWNDQGPVECRAKSLLGEDYGSGNLSTLSEP--VIHMTETLVFAPNGVNFQLPECKVRSNPTATVTWKRIFWSM-PVGRFNVQENKLMINNVRYSDEGFYVCEAENYLGKDKKTVQLKVKAFEMYHSSPSYIASMTTDTTNVT--------CSAYGNTKEMTGTISKSGRNIPVVIEKR-----EDNLFVVAAEVSEDGTYVC 406
             EC   GNP+PTI+W  V  NG + S     KS+    L + N+  +D G  ECRA++  G++   G L   + P  V  + +T + + + + +   ECK    P  T  W +    + P  R  +    LMI+NV  SD G Y C AEN  G    + +LK+ A     S+P++  +    T  VT        C   G+ K    TIS    +  V   KR     + +L ++ A  S++G YVC
Sbjct:  320 MECFALGNPVPTITWMKV--NGYIPSKARLRKSQAV--LEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDTQLDSGSPLRW---ECKATGKPRPTYRWLKNGVPLSPQSRVEMVNGVLMIHNVNQSDAGMYQCLAENKYGAIYASAELKILA-----SAPTFALNQLKKTIIVTKDQEVVIECKPQGSPKP---TISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVC 551
The following BLAST results are available for this feature:
BLAST of TCONS_00053313-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTN51.190e-1630.36Contactin-5 OS=Homo sapiens GN=CNTN5 PE=1 SV=2[more]
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