TCONS_00053640-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053640-protein
Unique NameTCONS_00053640-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053640-protein ID=TCONS_00053640-protein|Name=TCONS_00053640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MIIPEDEELRNIIDKLANFVARNGPQFEQLTKSKQQDNPKFSFLFGGDYH
QYYKWKVGVEATQANAQARKETQNPTVLARKETQPEKTEDIPKPEGFDIK
PFKELLQKLIITCTKDNIQNGKNWIVEHAKTDNQLKKVSQYFLRRMLEEN
LPFQQKLHIVYLTNDLLHHSRKKDLPHIHDGLEHYVLPMIAMSFHDATAE
QQAKLVKVLNIWNTQSFFKEETRELLKKHDELVDIQAERVRQERTIMDEE
QKPKEPPPQEKVDPPPKPDQQYQNYDQWSRPPPQGPPPYYPPQDQFPPQQ
FQQPPPGFQQGGFPPQGQPGYQEFGQFPPTQTFDYSHQSIDQNAAPPATQ
PPGQPMTFDYEHGRAPLPDGAPPPPAMADPTIPQAPYFDLPAGLMVPLVK
LWDSEYKPIDPKDIRLPIPQPPSERLLAALEAFYSAPSHDRPRDNQGWEK
NGLFEFYKAKLKYIKDKDKNLEVFDRSPSPPPSPDESNLDDDHEVEQWIK
XL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033834XLOC_033834Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053640TCONS_00053640Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000061Surp
IPR008942ENTH_VHS
IPR006903RNA_pol_II-bd
IPR006569CID_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 232..252
IPR000061SWAP/SurpSMARTSM00648surpneu2coord: 10..63
e-value: 1.2E-18
score: 78.0
IPR000061SWAP/SurpPFAMPF01805Surpcoord: 10..57
e-value: 3.3E-19
score: 68.5
IPR000061SWAP/SurpPROSITEPS50128SURPcoord: 12..54
score: 15.077
IPR000061SWAP/SurpSUPERFAMILY109905Surp module (SWAP domain)coord: 2..57
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 94..245
e-value: 6.5E-23
score: 80.7
IPR006903RNA polymerase II-binding domainPFAMPF04818CTD_bindcoord: 156..218
e-value: 7.7E-12
score: 45.8
IPR006569CID domainPROSITEPS51391CIDcoord: 94..233
score: 22.438

Blast
[Close]
BLAST of TCONS_00053640-protein vs. Swiss-Prot (Human)
Match: CHERP (Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.371e-33
Identity = 92/198 (46.46%), Postives = 107/198 (54.04%), Query Frame = 0 
Query:  290 YPPQDQFP-------PQQFQQPPPGFQQGGFPPQGQPGYQEFGQFPPTQTFDYSHQSIDQNAAPPATQPPGQPMTFDYEHGRAPL-----PDGAPPP-------PAMA----------DPT-IPQAPYFDLPAGLMVPLVKLWDSEYKPIDPKDIRLPIPQPPSERLLAALEAFYSAPSHDRPRDNQGWEKNGLFEFY 457
            +PP  Q P       P  F + PP F Q  FPP+       F + P    FDY          PP   P G  M     +   P      PD  PPP       P M           DP+ +P  PYFDLPAGLM PLVKL D EYKP+DPKDIRLP P PPSERLLAA+EAFYS PSHDRPR+++GWE+NGL+EF+
Sbjct:  526 FPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPR-----HPFERPPYPHRFDYPQGDFPAEMGPPHHHP-GHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFF 717

HSP 2 Score: 97.0561 bits (240), Expect = 3.387e-21
Identity = 41/132 (31.06%), Postives = 73/132 (55.30%), Query Frame = 0 
Query:   97 FDIKPFKELLQKLIITCTKDNIQNGKNWIVEHAKTDNQLKKVSQYFLRRMLEENLPFQQKLHIVYLTNDLLHHSRKKDLPHIHDGLEHYVLPMIAMSFHDATAEQQAKLVKVLNIWNTQSFFKEETRELLKK 228
             D+  F  LLQ +I TCTKD I  GKNW+  +AK+    + ++ +   R+  +   F+ +LH++YL ND+LHH ++K    +   L+  V+P+   SF     ++Q K+ ++L +W    +F +   + L+ 
Sbjct:  152 LDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQS 283

HSP 3 Score: 92.0485 bits (227), Expect = 1.671e-19
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0 
Query:    4 PEDEELRNIIDKLANFVARNGPQFEQLTKSKQQDNPKFSFLFGGDYHQYYKWKVGVEATQ 63
            P+D+ELRN+IDKLA FVARNGP+FE++T  KQ+DNPKFSFLFGG+++ YYK K+ +E  Q
Sbjct:    7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQ 66
The following BLAST results are available for this feature:
BLAST of TCONS_00053640-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHERP5.371e-3346.46Calcium homeostasis endoplasmic reticulum protein ... [more]
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