TCONS_00053701-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053701-protein
Unique NameTCONS_00053701-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053701-protein ID=TCONS_00053701-protein|Name=TCONS_00053701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MTMKTVVFILLVTVLACTQAMKNDNNGLCKDGRDGRDGKDGKDGIGLNGK
DGKDGRDGRNGINGKDGKDGKQGLNGKPGKDGLNGKNGKDGLNGKPGEDG
KNGIDGRDGSNGAPGKDGLNGKDGKDGIDGKDGNNGNEPSKKNWKECAWN
HINDGKDSGEIKHCLFKKNSIKSYLKVVASSNMRIVNCNSCCKRWFVTFD
GHECASVPIDGVVYMDLGTGSRQKNLHRPRVVRGHCKISKNHQVKVALNV
GNCHGYGNADAYTGWNSATRIYIEEVDEPQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033869XLOC_033869Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053701TCONS_00053701Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.50coord: 17..143
e-value: 0.0021
score: 17.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..143
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 32..91
e-value: 1.2E-7
score: 31.3
coord: 79..137
e-value: 1.1E-9
score: 37.8

Blast
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BLAST of TCONS_00053701-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.771e-41
Identity = 75/187 (40.11%), Postives = 108/187 (57.75%), Query Frame = 0 
Query:   99 DGKNGIDGRDGSNGAPGKDGLNGKDGKDGIDGKDGNNGNEPSKKNW----KECAWNHINDGKDSGEIKHCLFKKNSIKSYLKVVASSNMRIVNCNSCCKRWFVTFDGHECA-SVPIDGVVYMDLGTGSRQK--NLHRPRVVRGHCKISKNHQVKVALNVGNCHGYGNADAYTGWNSATRIYIEEVDE 278
             G  G+ GRDGS GA G  G  G  G+DG  G+ G    E  +++W    K+C+W+ +N G D G+I  C F K    S L+V+ S ++R+   N+CC+RW+ TF+G EC+  +PI+ ++Y+D G+       N+HR   V G C+      V VA+ VG C  Y   DA TGWNS +RI IEE+ +
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00053701-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR14.771e-4140.11Collagen triple helix repeat-containing protein 1 ... [more]
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