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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053701 ID=TCONS_00053701|Name=TCONS_00053701|organism=Clytia hemisphaerica|type=transcript|length=1536bp
TCAGCACGATATAAAATATAATCGGATgataaaattcatcaaattttcaG
GAAGTGTAATTCTTTTTCGTGAGCAAAAATTTGTCATTTCTCTATTGTTA
AGTATGGGCGTAATAAAAGATCTTTTAAATCAATGATGTAGAATAAAGGA
AAGAAAGATAATATCAAAATGATTGCTATAAAAGAACATGTTCACTAGCc
tactttcaaaaatatatcaaaatcatTGTGGTCCTGAAAGGATATCGAGC
AATAAAGCAATCAATTTGGATGACCATGAAGACTGTTGTCTTTATTCTAT
TAGTGACAGTGCTAGCATGTACACAAGCAATGAAAAATgACAACAATGGT
TTATGTAAAGATGGGCGTGACGGGCGTGATGGAAAAGATGGAAAAGATGG
AATCGGTTTAAACGGAAAAGACGGAAAGGATGGCAGAGATGGTCGGAACG
GAATCAATGGAAAGGATGGGAAAGATGGAAAGCAAGGATTGAATGGAAAA
CCGGGAAAAGACGGATTGAATGGGAAAAATGGAAAAGACGGACTGAATGG
AAAACCTGGCGAAGACGGAAAGAATGGAATTGATGGAAGAGATGGAAGTA
ATGGGGCACCAGGAAAAGACGGCTTAAATGGAAAAGATGGAAAGGACGGA
ATTGATGGAAAAGATGGAAACAACGGGAACGAACCGTCAAAGAAGAACTG
GAAAGAATGCGCTTGGAACCATATCAATGACGGTAAAGATAGTGGCGAGA
TCAAGCATTGCTTATTCAAAAAGAATTCAATCAAATCATACTTGAAAGTC
GTGGCATCTTCAAATATGAGAATAGTTAACTGTAACAGTTGCTGTAAACG
TTGGTTTGTCACTTTTGATGGACATGAATGTGCATCTGTGCCGATAGACG
GTGTAGTCTACATGGATTTGGGTACTGGAAGTCGTCAAAAAAACTTACAT
CGACCACGAGTTGTTCGTGGACAttgtaaaatttcgaaaaatcatCAAGT
CAAAGTGGCTCTCAATGTTGGTAATTGTCATGGTTACGGGAATGCCGACG
CATACACAGGGTGGAATTCAGCAACAAGAATTTACATCGAAGAAGTTGAC
GAACCCCAATCTTAAAACGATGGTGtctttttttatcttaaaattgtttt
gtttttctcgggtaagttatggcatgtctcaaaaactgaaaattaccata
atttttagatagatcgcattagtcgacagaaaatgaccaaacaaatgact
gaacatgaagggtactatgatgaagtttctaacctgatgtgtaacctaat
agttttttcgctgattttcgcgaaaaacctcaaaaactgattattacgtc
ataattgatgacgtcatagaaactaaaaattgaatttctcaagaatggtt
tatccaattgtctttaaacttttaccaaagatgtatctcaccAAAGTCAA
tcatttgagaaaaatattttttcgaaattttgatgacgtcagcagaaatt
agtaaaaaacgaaaaatcctatttgttgctgacgta Run BLAST on NCBI protein sequence of TCONS_00053701-protein >TCONS_00053701-protein ID=TCONS_00053701-protein|Name=TCONS_00053701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MTMKTVVFILLVTVLACTQAMKNDNNGLCKDGRDGRDGKDGKDGIGLNGK
DGKDGRDGRNGINGKDGKDGKQGLNGKPGKDGLNGKNGKDGLNGKPGEDG
KNGIDGRDGSNGAPGKDGLNGKDGKDGIDGKDGNNGNEPSKKNWKECAWN
HINDGKDSGEIKHCLFKKNSIKSYLKVVASSNMRIVNCNSCCKRWFVTFD
GHECASVPIDGVVYMDLGTGSRQKNLHRPRVVRGHCKISKNHQVKVALNV
GNCHGYGNADAYTGWNSATRIYIEEVDEPQS Run BLAST on NCBI transcript from alignment at scaffold_233:1208995..1213234- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053701 ID=TCONS_00053701|Name=TCONS_00053701|organism=Clytia hemisphaerica|type=transcript|length=4240bp|location=Sequence derived from alignment at scaffold_233:1208995..1213234- (Clytia hemisphaerica)
TCAGCACGATATAAAATATAATCGGATGATAAAATTCATCAAATTTTCAG
GAAGTGTAATTCTTTTTCGTGAGCAAAAATTTGTCATTTCTCTATTGTTA
AGTATGGGCGTAATAAAAGATCTTTTAAATCAATGATGTAGAATAAAGGA
AAGAAAGATAATATCAAAATGATTGCTATAAAAGAACATGTTCACTAGCC
TACTTTCAAAAATATATCAAAATCATTGTGGTCCTGAAAGGATATCGAGC
AATAAAGCAATCAATTTGGATGACCATGAAGACTGTTGTCTTTATTCTAT
TAGTGACAGTGCTAGCATGTACACAAGCAATGAAAAATGTAGGTTAACTA
TTTATTCAATGCAATACTGCAATACTCCTTTTCTTTTGGGAAGATGAAAG
GTGACTCGCAGGTGGCAGGGTATGCTTACTCTATAGGTACCGCACCTGAT
CTGAGACTTCGGTCTTCATCTTTCCATATTTTTTCCATTTTTTTTAGACC
AGCAAAAAAGGCCTAAAAATGGTTTTCGTAGGGCACCTCTTAGATCAGGG
CAAGTTTTTGATATTATGCTCCTAATACGTGTAGGTATATCCGGGGGGCA
CTGGGTTTGCGGACTGACGGTATGTGCGGGCCAAAAATTGGCTTTTAAAT
TGCACCCTTACAGTGCAGCAAAAATCAGTGAAAATCATACCCTTAGAGTG
CATTTTCCCCCAAATTTTCGATCCCTTTCGTGCAAAAAATGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCAAAAAATG
GTCAAAATTCTAGCATTTTTGGTCAAAATATCTAGATTTTTCAAGAATTT
TCTGAAATTTCTACCCTTACAGTGCATCTCTAGTTTTTCCGAGCCTTACA
GTGCATTTTAAACATATTGGAAAAGGTACCCTTAGGACCCGCACATACCC
GTCGGTCCTTTTGCCCAGCTGCTCCCCCCGGGAGGTATATCCAAAAATGG
TATGGTTTGTCAACTTTCGATGTCTAGATCTCGAGATAATTCACTTTTAA
GATGGATAAATATGCTGAAAAACTGCTGACTCAGCAAAAAATATCGATAA
TTTTCAATATTTAAACCAAAACATCTCGAGATCTAGACATGATATTTGAT
TTTTAGGCTTAAAAAAACCGTTAGTAAAGGTGATGAGTTCTATGTTCTAT
CGATTAACTAAAAATCGATTCAGTCGAAAACTGCCGGAGATTCGTAGGGC
AAATTCTTTTTGTCAATTCTGTACCCTATTAGGAGCATAATATCAAAAAT
TTGCCCTGATCTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGTCG
TGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGT
TGTACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCTGAAGGGATTTGATTAAAAAGCAATTTATAAAGGTAATT
CTTTGTTGAAAGTGTTAAAGAACCTAAAACATAACTTTTATGTTCAAATA
CTAAAATCATTTTCCGACTATGGTCAGAGCCCTTAAGGGGTGCTCTACGG
AATTCACTGCCTCGGCCGCTGGTCTATTTGGTTTAAATCTCTTTTCATTT
TAATAATTGGGAACCTATTCGCTAGAAATTTGTTTTTAAATTATTCTAGT
AATGTGTCTCTAGTGAAATTTGGTTTGTTTTGACTTTTGTCTTTTAGGAT
TTTGGGTTCTTAAAATTCATTAGTTAAATTTATTGTTGTCATATGATGTG
GGAAAAGTTTAGTGTTTTCTGATACTTGATTAGCTTTTTCAGATATCAGT
GGTAGCGGGCGGTTCTAATAATTTTGATGATGTTACATAGTTTGGCATAG
CTGGCCACTCTAGAGTCGTTTTTGTAGCGTTTTTTTTTCATTGCCGCTAA
CGATTTGAACGGATTTAAACTGTTTCGACATCTGGGATCACTAGTCTAAA
AACGTCTCAAAAAGCTTGTTTTTTTTTTTAACTCAAAAGGACAACAATGG
TTTATGTAAAGATGGGCGTGACGGGCGTGATGGAAAAGATGGAAAAGATG
GAATCGGTTTAAACGGAAAAGACGGAAAGGATGGCAGAGATGGTCGGAAC
GGAATCAATGGAAAGGATGGGAAAGATGGAAAGCAAGGATTGAATGGAAA
ACCGGGAAAAGACGGATTGAATGGGAAAAATGGAAAAGACGGACTGAATG
GAAAACCTGGCGAAGACGGAAAGAATGGAATTGATGGAAGAGATGGAAGT
AATGGGGCACCAGGAAAAGACGGCTTAAATGGAAAAGATGGAAAGGACGG
AATTGATGGAAAAGATGGAAACAACGGGAACGAACCGTCAAAGAAGAACT
GGAAAGAATGCGCTTGGAACCATATCAATGACGGTAAAGATAGTGGCGAG
ATCAAGGTAGGTACAAGGATTTCGGTGTCAAAGCGGTAGACCAATTCTTT
CTTCTAGAGGGTTAAAATTCCTACAAAAAGGCTGACGTTTTCCCAAAGAA
AGAAAAGTAAATAAATTCTTCTNTTCGTTCTACTAGAGGGTTAAAATTCC
TACAAAAAGGCTGACGTTTTCCTAAAGAAAGAAAATTAAAGAAATTCTTA
CATTTTTAGCATTGCTTATTCAAAAAGAATTCAATCAAATCATACTTGAA
AGTCGTGGCATCTTCAAATATGAGAATAGTTAACTGTAACAGTTGCTGTA
AACGTTGGTTTGTCACTTTTGATGGACATGAATGTGCATCTGTGCCGATA
GACGGTGTAGTCTACATGGATTTGGGTACTGGAAGTCGTCAAAAAAACTT
ACATCGACCACGAGTTGTTCGTGGACATTGTAAAATTTCGAAAAATCATC
AAGTCAAAGTGGCTCTCAATGTTGGTAATTGTCATGGTTACGGGAATGCC
GACGCATACACAGGGTGGAATTCAGCAACAAGAATTTACATCGAAGAAGT
TGACGAACCCCAATCTTAAAACGATGGTGTCTTTTTTTATCTTAAAATTG
TTTTGTTTTTCTCGGGTAAGTTATGGCATGTCTCAAAAACTGAAAATTAC
CATAATTTTTAGATAGATCGCATTAGTCGACAGAAAATGACCAAACAAAT
GACTGAACATGAAGGGTACTATGATGAAGTTTCTAACCTGATGTGTAACC
TAATAGTTTTTTCGCTGATTTTCGCGAAAAACCTCAAAAACTGATTATTA
CGTCATAATTGATGACGTCATAGAAACTAAAAATTGAATTTCTCAAGAAT
GGTTTATCCAATTGTCTTTAAACTTTTACCAAAGATGTATCTCACCAAAG
TCAATCATTTGAGAAAAATATTTTTTCGAAATTTTGATGACGTCAGCAGA
AATTAGTAAAAAACGAAAAATCCTATTTGTTGCTGACGTA Coding sequence (CDS) from alignment at scaffold_233:1208995..1213234- >TCONS_00053701 ID=TCONS_00053701|Name=TCONS_00053701|organism=Clytia hemisphaerica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_233:1208995..1213234- (Clytia hemisphaerica)
CATTGCTTATTCAAAAAGAATTCAATCAAATCATACTTGAAAGTCGTGGC
ATCTTCAAATATGAGAATAGTTAACTGTAACAGTTGCTGTAAACGTTGGT
TTGTCACTTTTGATGGACATGAATGTGCATCTGTGCCGATAGACGGTGTA
GTCTACATGGATTTGGGTACTGGAAGTCGTCAAAAAAACTTACATCGACC
ACGAGTTGTTCGTGGACATTGTAAAATTTCGAAAAATCATCAAGTCAAAG
TGGCTCTCAATGTTGGTAATTGTCATGGTTACGGGAATGCCGACGCATAC
ACAGGGTGGAATTCAGCAACAAGAATTTACATCGAAGAAGTTGACGAACC
CCAATCTTAAGACAACAATGGTTTATGTAAAGATGGGCGTGACGGGCGTG
ATGGAAAAGATGGAAAAGATGGAATCGGTTTAAACGGAAAAGACGGAAAG
GATGGCAGAGATGGTCGGAACGGAATCAATGGAAAGGATGGGAAAGATGG
AAAGCAAGGATTGAATGGAAAACCGGGAAAAGACGGATTGAATGGGAAAA
ATGGAAAAGACGGACTGAATGGAAAACCTGGCGAAGACGGAAAGAATGGA
ATTGATGGAAGAGATGGAAGTAATGGGGCACCAGGAAAAGACGGCTTAAA
TGGAAAAGATGGAAAGGACGGAATTGATGGAAAAGATGGAAACAACGGGA
ACGAACCGTCAAAGAAGAACTGGAAAGAATGCGCTTGGAACCATATCAAT
GACGGTAAAGATAGTGGCGAGATCAAGATGACCATGAAGACTGTTGTCTT
TATTCTATTAGTGACAGTGCTAGCATGTACACAAGCAATGAAAAATCATT
GCTTATTCAAAAAGAATTCAATCAAATCATACTTGAAAGTCGTGGCATCT
TCAAATATGAGAATAGTTAACTGTAACAGTTGCTGTAAACGTTGGTTTGT
CACTTTTGATGGACATGAATGTGCATCTGTGCCGATAGACGGTGTAGTCT
ACATGGATTTGGGTACTGGAAGTCGTCAAAAAAACTTACATCGACCACGA
GTTGTTCGTGGACATTGTAAAATTTCGAAAAATCATCAAGTCAAAGTGGC
TCTCAATGTTGGTAATTGTCATGGTTACGGGAATGCCGACGCATACACAG
GGTGGAATTCAGCAACAAGAATTTACATCGAAGAAGTTGACGAACCCCAA
TCTTAAGACAACAATGGTTTATGTAAAGATGGGCGTGACGGGCGTGATGG
AAAAGATGGAAAAGATGGAATCGGTTTAAACGGAAAAGACGGAAAGGATG
GCAGAGATGGTCGGAACGGAATCAATGGAAAGGATGGGAAAGATGGAAAG
CAAGGATTGAATGGAAAACCGGGAAAAGACGGATTGAATGGGAAAAATGG
AAAAGACGGACTGAATGGAAAACCTGGCGAAGACGGAAAGAATGGAATTG
ATGGAAGAGATGGAAGTAATGGGGCACCAGGAAAAGACGGCTTAAATGGA
AAAGATGGAAAGGACGGAATTGATGGAAAAGATGGAAACAACGGGAACGA
ACCGTCAAAGAAGAACTGGAAAGAATGCGCTTGGAACCATATCAATGACG
GTAAAGATAGTGGCGAGATCAAGATGACCATGAAGACTGTTGTCTTTATT
CTATTAGTGACAGTGCTAGCATGTACACAAGCAATGAAAAATCATTGCTT
ATTCAAAAAGAATTCAATCAAATCATACTTGAAAGTCGTGGCATCTTCAA
ATATGAGAATAGTTAACTGTAACAGTTGCTGTAAACGTTGGTTTGTCACT
TTTGATGGACATGAATGTGCATCTGTGCCGATAGACGGTGTAGTCTACAT
GGATTTGGGTACTGGAAGTCGTCAAAAAAACTTACATCGACCACGAGTTG
TTCGTGGACATTGTAAAATTTCGAAAAATCATCAAGTCAAAGTGGCTCTC
AATGTTGGTAATTGTCATGGTTACGGGAATGCCGACGCATACACAGGGTG
GAATTCAGCAACAAGAATTTACATCGAAGAAGTTGACGAACCCCAATCTT
AAGACAACAATGGTTTATGTAAAGATGGGCGTGACGGGCGTGATGGAAAA
GATGGAAAAGATGGAATCGGTTTAAACGGAAAAGACGGAAAGGATGGCAG
AGATGGTCGGAACGGAATCAATGGAAAGGATGGGAAAGATGGAAAGCAAG
GATTGAATGGAAAACCGGGAAAAGACGGATTGAATGGGAAAAATGGAAAA
GACGGACTGAATGGAAAACCTGGCGAAGACGGAAAGAATGGAATTGATGG
AAGAGATGGAAGTAATGGGGCACCAGGAAAAGACGGCTTAAATGGAAAAG
ATGGAAAGGACGGAATTGATGGAAAAGATGGAAACAACGGGAACGAACCG
TCAAAGAAGAACTGGAAAGAATGCGCTTGGAACCATATCAATGACGGTAA
AGATAGTGGCGAGATCAAGATGACCATGAAGACTGTTGTCTTTATTCTAT
TAGTGACAGTGCTAGCATGTACACAAGCAATGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053701-exon-scaffold_233-1575043694:1212897..1213234 | TCONS_00053701-exon-scaffold_233-1575043694:1212897..1213234 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1575043694:1209979..1210395 | TCONS_00053701-exon-scaffold_233-1575043694:1209979..1210395 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1575043694:1208995..1209775 | TCONS_00053701-exon-scaffold_233-1575043694:1208995..1209775 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1510915933:1212897..1213234 | TCONS_00053701-exon-scaffold_233-1510915933:1212897..1213234 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1510915933:1209979..1210395 | TCONS_00053701-exon-scaffold_233-1510915933:1209979..1210395 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1510915933:1208995..1209775 | TCONS_00053701-exon-scaffold_233-1510915933:1208995..1209775 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1491911889:1212897..1213234 | TCONS_00053701-exon-scaffold_233-1491911889:1212897..1213234 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1491911889:1209979..1210395 | TCONS_00053701-exon-scaffold_233-1491911889:1209979..1210395 | Clytia hemisphaerica | exon |
| TCONS_00053701-exon-scaffold_233-1491911889:1208995..1209775 | TCONS_00053701-exon-scaffold_233-1491911889:1208995..1209775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:1208995..1213234 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
BLAST of TCONS_00053701 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.157e-30 Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 3
Query: 564 DGKNGIDGRDGS---NGAPXXXXXXXXXXXXXXXXXXXXXXXEPS-KKNWKECAWNHINDGKDSGEIKHCLFKKNSIKSYLKVVASSNMRIVNCNSCCKRWFVTFDGHECA-SVPIDGVVYMDLGTGSRQK--NLHRPRVVRGHCKISKNHQVKVALNVGNCHGYGNADAYTGWNSATRIYIEEVDE 1103
G G+ GRDGS NG PG G+ G+DG G G+ E S N+K+C+W+ +N G D G+I C F K S L+V+ S ++R+ N+CC+RW+ TF+G EC+ +PI+ ++Y+D G+ N+HR V G C+ V VA+ VG C Y DA TGWNS +RI IEE+ +
Sbjct: 57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
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