TCONS_00054222-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054222-protein
Unique NameTCONS_00054222-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054222-protein ID=TCONS_00054222-protein|Name=TCONS_00054222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MERVMDPDAMFLPHENSDLKYRHHEKIAQPPKTRRYLMDEKFLRKSTSFD
IRGHHRSEHRPVCDIPLVYDPMRDCGPRAQWHGAPSHVHGSYIKQEYDTF
ETNEDVYMLPKRSNSTSPTSNMRRHLSNTPPLSSTPPSATPSSQSSTSAD
SFSIKHILKKEKSQPLQTDYQIDHKRRYSSSLSPPTFYHDKLSPITTCLP
SPSNYYGNYRASQLFDDDRYFPSKYNTMGCRKYHKLPPFLEHSRFISSPP
LPPSSHHLDRLHLSANAYTKDNIGKRAHRIEGRSSKDGHSIKTKSTRLTS
SGKKRRRHRTAFTPTQLLGLENSFERGHYLVGDERKQLAAFLRLSETQIK
VWFQNRRTKYKRQRNAMYENNGVLSDGSDYSDIGEEEEEECV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034200XLOC_034200Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054222TCONS_00054222Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 305..367
e-value: 1.9E-25
score: 100.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 306..362
e-value: 1.3E-20
score: 72.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 303..363
score: 20.455
NoneNo IPR availableGENE3D1.10.10.60coord: 297..373
e-value: 3.3E-24
score: 83.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..392
NoneNo IPR availableCDDcd00086homeodomaincoord: 306..364
e-value: 6.39669E-20
score: 81.5208
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 338..361
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 302..368

Blast
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BLAST of TCONS_00054222-protein vs. Swiss-Prot (Human)
Match: EMX1 (Homeobox protein EMX1 OS=Homo sapiens GN=EMX1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.291e-22
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:  302 GKKRRRHRTAFTPTQLLGLENSFERGHYLVGDERKQLAAFLRLSETQIKVWFQNRRTKYKRQR 364
             +K +R RTAF+P+QLL LE +FE+ HY+VG ERKQLA  L LSETQ+KVWFQNRRTKYKRQ+
Sbjct:  156 ARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQK 218
The following BLAST results are available for this feature:
BLAST of TCONS_00054222-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMX12.291e-2269.84Homeobox protein EMX1 OS=Homo sapiens GN=EMX1 PE=1... [more]
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