TCONS_00054241-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054241-protein
Unique NameTCONS_00054241-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054241-protein ID=TCONS_00054241-protein|Name=TCONS_00054241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MRKKKKGKKMLFEISWKFFVFVLLITFTSAVETETQEHLEIKLFTIATDP
TDGYNRFMKSAKHYGYDVEVCGMNQKWLGGDLSKGPGGGFKIKLLIRCLK
QYKEEKDMLAMFTDSYDVVLNQPPSYVLKQYKEMNASVIFSAEDLIWPDR
SLAKHYPDSDGYRYLCSGGYIGPVSTIWKLLLLKDIENRADDQLYFTNIF
LESRVSNIKFNF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034214XLOC_034214Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054241TCONS_00054241Clytia hemisphaericatranscript
Blast
[Close]
BLAST of TCONS_00054241-protein vs. Swiss-Prot (Human)
Match: PLOD2 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Homo sapiens GN=PLOD2 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.043e-37
Identity = 60/161 (37.27%), Postives = 108/161 (67.08%), Query Frame = 0 
Query:   43 LFTIATDPTDGYNRFMKSAKHYGYDVEVCGMNQKWLGGDLSKGPGGGFKIKLLIRCLKQYKEEKDMLAMFTDSYDVVLNQPPSYVLKQYKEMNASVIFSAEDLIWPDRSLAKHYPDSD-GYRYLCSGGYIGPVSTIWKLLLLKDIENRADDQLYFTNIFLE 202
            + T+AT  +DG++RFM+SAK++ Y V+V G  ++W GGD     GGG K++L+   ++ Y ++ D++ MFT+ +DV+    P  VLK++++ N  V+F+A+ ++WPD+ LA  YP    G RYL SGG+IG    + +++   ++++  DDQL++T ++++
Sbjct:   41 VITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQKVRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKRLADKYPVVHIGKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYID 201
The following BLAST results are available for this feature:
BLAST of TCONS_00054241-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLOD24.043e-3737.27Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 ... [more]
back to top