TCONS_00054291-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054291-protein
Unique NameTCONS_00054291-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054291-protein ID=TCONS_00054291-protein|Name=TCONS_00054291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
YKLTYIKKQKMSIEIGPPLEEAQLPIYVPFEEKHFVVPGDVITEDSGFMK
GHGTFADGMERLAASVAGTVERVNKLVSVKPFKSRYAGEVGDVIVGRISE
VAQKKWRVDTNARMDSVLLLSGVNLPGGELRKRSAVDELLMRDYLVEGDL
IVAEVQSEFQDGSLSLHTRNLKYGKLPQGIMFKVPASLIKRCKTHMHNLH
CGATIILGNNGYVWIGPVMHDMDLSLREVKREKISKVDRESIARLRNCIS
AMASHGVLLYDTSITFAFEASLKYDIKDLLKPDIQVELVDATRRNLAQHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034239XLOC_034239Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054291TCONS_00054291Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR004088KH_dom_type_1
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 92..181
e-value: 3.0E-10
score: 39.4
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 85..176
e-value: 1.06787E-34
score: 121.503
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 34..84
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 35..73
e-value: 4.4E-12
score: 45.5
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 179..216
e-value: 1.2E-11
score: 44.7
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 178..296
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 84..176

Blast
[Close]
BLAST of TCONS_00054291-protein vs. Swiss-Prot (Human)
Match: EXOS2 (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.300e-114
Identity = 160/270 (59.26%), Postives = 209/270 (77.41%), Query Frame = 0 
Query:   32 EKHFVVPGDVITEDSGFMKGHGTFADGMERLAASVAGTVERVNKLVSVKPFKSRYAGEVGDVIVGRISEVAQKKWRVDTNARMDSVLLLSGVNLPGGELRKRSAVDELLMRDYLVEGDLIVAEVQSEFQDGSLSLHTRNLKYGKLPQGIMFKVPASLIKRCKTHMHNLHCGATIILGNNGYVWIGPVMH--DMDLSLREVKREKISKVDRESIARLRNCISAMASHGVLLYDTSITFAFEASLKYDIKDLLKPDIQVELVDATRRNLAQH 299
            +KH VVPGD IT D+GFM+GHGT+  G E+L ASVAG+VERVNKL+ VK  K+RY GEVGD++VGRI+EV QK+W+V+TN+R+DSVLLLS +NLPGGELR+RSA DEL MR +L EGDLI AEVQ+ F DG++SLHTR+LKYGKL QG++ +V  SL+KR KTH H+L CGA++ILGNNG++WI P     + +        E +S  DRE I+RLRNCI ++ +  ++LYDTSI + +EASL + IKD+LKP+I  E+V  TR+ L + 
Sbjct:   23 KKHLVVPGDTITTDTGFMRGHGTYM-GEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQ 291
The following BLAST results are available for this feature:
BLAST of TCONS_00054291-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS21.300e-11459.26Exosome complex component RRP4 OS=Homo sapiens GN=... [more]
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