TCONS_00054333-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054333-protein
Unique NameTCONS_00054333-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length977

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054333-protein ID=TCONS_00054333-protein|Name=TCONS_00054333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=977bp
METPQNKFIDNVSELAKEIDANFVLANAALDFYPIIYCSQGFFGDVGWTR
NEVTTKDVYLNFMFGRQTGKKPRRLFEKGISKKAFTQVEMILYSKGGTKR
WFLVTLMPVKDEHKKTSIFIVFFNYISHLKDPIAESPRRLWKIATRVALK
KPSLEYFRRHCDKKKDGEKKRRLDVHTIKAKINYSFIPIYGLTKPQVPRH
LIRHSSIGKSIWDWFILLLILYTSVMVPFLIAFETNLDIVHYLDTFVDVM
FIFDIVLTFFTTYVENGEIITNAKQIRRHYFRGWFLGDCFGAFPFSFVMY
AIDKKEGQVLGILRGLKIIRLIRVAKVRKKIGRYMQMSAVTLGVWLLVFC
LCGHWMACVWYLIGTSWDKPGIKKHSWLFILSEIVDQPYNFTAQGDIVEG
TGPDLFTVYFSALYYTMSSLTTCGFGNIAPNTAAEKFFGCGSMLLGCVLY
ALIFGQVTNIISQLQKSSNEFTDQVTTIKNFNKIYKMPPRVAKRFEDYVV
SKWAVTKGTDADQIIKPCPRDLQADICMNIHRTVFQNNSAFTHLSEPALR
ALSRFFYTTRTAPGDKLINTGEEVDTVYFVADGSLEVYSGTELVGLIGPK
DSFGKRLTDEDTTKSVYDVKACSYCNIHSVSCDSVADALYLYPEEYDKIK
YDLQLAFDITRQLETVTKSGDIISTEELVKEKPELTRDMSRSKVKSSQSL
CLGEEGMSDVLTGVEGPGYFATRSHSDVLSGMSELKGELRRETERMNAKM
GIVEAQMRLVLKLLRRNNKINDIDPEIGMQLDELMQYDEQEGGEEEDTEW
FVADAHGWKEEPPRRDSRLQTKNTGSSSGNSMASVETIPHQQLIQSTSPT
DKKASEENKPTQVLPKKTSEISKTQKASTVTTAPSKGFGADLKKKKKPEE
QVKSHTVVEVEKDSSQKTSQNMKPAIKKEVSNVRNEAVLPDKGSSSNTKE
RKAPPIPPRKSLRRGKSKDEDFETINL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034259XLOC_034259Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054333TCONS_00054333Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003938K_chnl_volt-dep_EAG/ELK/ERG
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
IPR005821Ion_trans_dom
IPR000014PAS
IPR000700PAS-assoc_C
IPR018490cNMP-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0000160phosphorelay signal transduction system
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
GO:0000155phosphorelay sensor kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0000155 phosphorelay sensor kinase activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003938Potassium channel, voltage-dependent, EAG/ELK/ERGPRINTSPR01463EAGCHANLFMLYcoord: 222..229
score: 51.95
coord: 244..254
score: 55.97
coord: 351..361
score: 66.48
coord: 503..510
score: 52.34
coord: 255..264
score: 65.0
coord: 435..446
score: 46.61
coord: 453..462
score: 60.31
coord: 619..627
score: 45.49
coord: 204..213
score: 47.5
coord: 409..426
score: 63.89
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 540..657
e-value: 2.0E-6
score: 37.3
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 561..634
e-value: 1.4E-6
score: 28.2
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 540..605
score: 13.396
NoneNo IPR availableGENE3D3.30.450.20coord: 20..129
e-value: 3.9E-8
score: 32.7
NoneNo IPR availableGENE3D1.20.120.350coord: 207..332
e-value: 6.8E-15
score: 54.4
NoneNo IPR availableGENE3D1.10.287.70coord: 333..466
e-value: 1.4E-23
score: 82.1
NoneNo IPR availableGENE3D1.10.287.630coord: 467..518
e-value: 3.4E-10
score: 39.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 806..977
NoneNo IPR availableCDDcd00038CAP_EDcoord: 540..644
e-value: 2.1924E-11
score: 61.1878
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 402..465
coord: 209..367
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 519..665
e-value: 1.5E-18
score: 66.4
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 210..468
e-value: 3.0E-29
score: 101.9
IPR000014PAS domainPFAMPF13426PAS_9coord: 34..127
e-value: 1.2E-6
score: 28.6
IPR000014PAS domainCDDcd00130PAScoord: 35..123
e-value: 1.09855E-4
score: 40.6943
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 34..124
IPR000700PAS-associated, C-terminalPROSITEPS50113PACcoord: 86..138
score: 8.674
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 466..650

Blast
[Close]
BLAST of TCONS_00054333-protein vs. Swiss-Prot (Human)
Match: KCNH1 (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 4.781e-139
Identity = 236/714 (33.05%), Postives = 391/714 (54.76%), Query Frame = 0 
Query:    3 TPQNKFIDNVSELAKEIDANFVLANAALDFYPIIYCSQGFFGDVGWTRNEVTTKDVYLNFMFGRQTGKKPRRLFEKGISKKAFTQVEMILYSKGGTKRWFLVTLMPVKDEHKKTSIFIVFFNYISHLKDPIAESPRRLW----KIATRVALKKPSLEYFRRHCDKKKDGEKKRRL-DVHTIKAKINYSFIPIYGLTKPQVPRHLIRHSSIGKSIWDWFILLLILYTSVMVPFLIAFETNLDIVHYL--DTFVDVMFIFDIVLTFFTTYV-ENGEIITNAKQIRRHYFRGWFLGDCFGAFPFSFVMY-------------------------AIDKKEGQ-VLGILRGLKIIRLIRVAKVRKKIGRYMQMSAVTLGVWLLVFCLCGHWMACVWYLIGT----SWDKPGIKKHSWLFILSEIVDQPYNFTAQGDIVEGTGPDLFTVYFSALYYTMSSLTTCGFGNIAPNTAAEKFFGCGSMLLGCVLYALIFGQVTNIISQLQKSSNEFTDQVTTIKNFNKIYKMPPRVAKRFEDYVVSKWAVTKGTDADQIIKPCPRDLQADICMNIHRTVFQNNSAFTHLSEPALRALSRFFYTTRTAPGDKLINTGEEVDTVYFVADGSLEVYSGTELVGLIGPKDSFGKRLTDEDT-TKSVYDVKACSYCNIHSVSCDSVADALYLYPEEYDKIKYDLQLAFDITRQLETVTKSGDIISTEE 677
             PQN F++N+  + +  D NFVL NA +  +PI+Y + GF    G+ R EV  K    +FM+G  T K       +          E+++Y K  T  WF V + P+++E  K  +F+  F+ I+  K PI +   + W    ++   +   +  L+       K ++  K  RL +V  + + I    +P Y    P+ P H+I H  + K+ WDW IL+L  YT+++VP+ ++F+T  + V +L  D+ VDV+F+ DIVL F TT+V   GE+I++ K IR +Y + WF+ D     P+  +                            ++ +E Q +  +   LK++RL+R+ +V +K+  Y++  A  L + + VF L  HWMAC+WY IG       D   I+ +SWL+ L+  +  PY F   G      GP   +VY S+LY+TM+SLT+ GFGNIAP+T  EK F    M++G +LYA IFG VT I  Q+  ++N + + + ++++F K+Y++P  +++R  DY+VS W++++G D +++++ CP+D++ADIC++++R VF+ + AF   S+  LRAL+  F T   APGD + + GE VD++ FV  GSLEV    E+V ++G  D FG     E T  +S  +V+A +YC++H +  D++   L  Y         +L L +++ +++    K  D+   EE
Sbjct:   12 APQNTFLENI--VRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQKGENVHKHSRLAEVLQLGSDI----LPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRI-VFRKISDVKREEE 718
The following BLAST results are available for this feature:
BLAST of TCONS_00054333-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH14.781e-13933.05Potassium voltage-gated channel subfamily H member... [more]
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