TCONS_00054335-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054335-protein
Unique NameTCONS_00054335-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054335-protein ID=TCONS_00054335-protein|Name=TCONS_00054335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=609bp
MKRYRRQEMDDSESDLEKEADDYVPYVPIKERKKQMLIKHRIISELEKQK
DSGQESENEEVLKQKEKEARQAMSLLDQHHEFKDEEDEVKETEMEKQLRE
EQKILESVAERKALMAAAELAKGITYEEALKTSWKPPRYISAYSEERHEK
VRKKYGILAEGNDCPPPLKRFREMKFPKSILNCLKAKGITNPTPIQMQGI
PVTLSGRDMIGIAFTGSGKTLVFTLPIVMFCIEQEKGLPFRKGEGPYGLL
ISPSRELAKQTADIIKEFVAALAKDGLPELKVLCCIGGTSMKEQAETIKH
GVHIVVATPGRLMDLLNKKIMNLDICRYLCLDEADRMIDMGFEDDVREIF
SYFKGQRQTLLFSATMPKKIQNFARSALVQPITVNVGRAGAASLNIIQEV
EYVRMDEKIVYLLECLQKTGPPVLIFAEKKSDVDDIHEYLLLKSVEAVAV
HGDKDQEDRHRSIQQYRNREKDVLVATDIASKGLDFPSIQHVINYDMPED
IENYVHRIGRTGRSGKKGVATTFINKNSDESVLLDLKHLLIESKQKLPPV
LAALESEHQYLNAGEQQGCSYCGGLGHRITDCPKLQAVQNKQVGSIGKAD
FLASNSADY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034261XLOC_034261Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054335TCONS_00054335Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR001878Znf_CCHC
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..111
NoneNo IPR availableGENE3D3.40.50.300coord: 30..398
e-value: 8.3E-62
score: 208.2
NoneNo IPR availableGENE3D3.40.50.300coord: 399..553
e-value: 1.0E-43
score: 148.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableCDDcd00268DEADccoord: 171..385
e-value: 1.73121E-81
score: 256.258
NoneNo IPR availableCDDcd00079HELICccoord: 395..523
e-value: 6.65219E-35
score: 127.354
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 434..515
e-value: 1.1E-29
score: 114.6
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 408..515
e-value: 6.8E-29
score: 100.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 408..555
score: 21.867
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 568..584
e-value: 0.0092
score: 23.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 561..598
e-value: 0.0012
score: 18.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 569..584
score: 8.664
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 564..591
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 188..399
e-value: 7.4E-56
score: 201.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 200..384
score: 29.396
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 193..372
e-value: 7.1E-47
score: 159.3
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 169..197
score: 9.873
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 245..531

Blast
[Close]
BLAST of TCONS_00054335-protein vs. Swiss-Prot (Human)
Match: DDX41 (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2)

HSP 1 Score: 796.579 bits (2056), Expect = 0.000e+0
Identity = 396/592 (66.89%), Postives = 484/592 (81.76%), Query Frame = 0 
Query:   23 YVPYVPIKERKKQMLIKHRIISEL----EKQKDSGQESENEEVLKQKEKEARQAMSLLDQHHEFKDEEDEVKETEMEKQLREEQKILESVAERKALMAAAELAKGITYEEALKTSWKPPRYISAYSEERHEKVRKKYGILAEGNDCPPPLKRFREMKFPKSILNCLKAKGITNPTPIQMQGIPVTLSGRDMIGIAFTGSGKTLVFTLPIVMFCIEQEKGLPFRKGEGPYGLLISPSRELAKQTADIIKEFVAALAKDGLPELKVLCCIGGTSMKEQAETIKHGVHIVVATPGRLMDLLNKKIMNLDICRYLCLDEADRMIDMGFEDDVREIFSYFKGQRQTLLFSATMPKKIQNFARSALVQPITVNVGRAGAASLNIIQEVEYVRMDEKIVYLLECLQKTGPPVLIFAEKKSDVDDIHEYLLLKSVEAVAVHGDKDQEDRHRSIQQYRNREKDVLVATDIASKGLDFPSIQHVINYDMPEDIENYVHRIGRTGRSGKKGVATTFINKNSDESVLLDLKHLLIESKQKLPPVLAALE-SEHQYLNAGEQQGCSYCGGLGHRITDCPKLQAVQNKQVGSIGKADFLASNSADY 609
            YVPYVP+++R++ +L K           E+Q+DSG E   +E         +  +SLLDQH   K++ +  KE+  EKQL+EE+KILESVAE +ALM+  E+AKGITY++ +KTSW PPRY+ + SEERHE+VRKKY IL EG+  PPP+K F+EMKFP +IL  LK KGI +PTPIQ+QGIP  LSGRDMIGIAFTGSGKTLVFTLP++MFC+EQEK LPF K EGPYGL+I PSRELA+QT  I++ +   L +D  P L+   CIGG S+KEQ ETI+HGVH++VATPGRLMDLL KK+++LDICRYL LDEADRMIDMGFE D+R IFSYFKGQRQTLLFSATMPKKIQNFA+SALV+P+T+NVGRAGAASL++IQEVEYV+ + K+VYLLECLQKT PPVLIFAEKK+DVD IHEYLLLK VEAVA+HG KDQE+R ++I+ +R  +KDVLVATD+ASKGLDFP+IQHVINYDMPE+IENYVHRIGRTGRSG  G+ATTFINK  DESVL+DLK LL+E+KQK+PPVL  L   +   L+ G ++GC++CGGLGHRITDCPKL+A+Q KQV +IG+ D+LA +S D+
Sbjct:   33 YVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDE--DDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF 622
The following BLAST results are available for this feature:
BLAST of TCONS_00054335-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX410.000e+066.89Probable ATP-dependent RNA helicase DDX41 OS=Homo ... [more]
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