Tbx transcription factor (polypeptide) - C. hemisphaerica

Overview
NameTbx transcription factor
Unique NameTCONS_00054433-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054433-protein ID=TCONS_00054433-protein|Name=Tbx transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MIPNFENNSAPMTNSYGYQPVAYGENGLPYNEMASSQQTDGQQKEGHKYA
TGNKTLPYYGNSTFKDPNPFFSTFQPNFHQRFTHFGASGLGYFPNPYLTS
FYDRMHEMEAKIPLEYARVWLDHQTLWRRFSVCGNEMIITKMGRRMFPVL
SFGVHSLNFTDLYTMEVEVIPSDNNRYKYVSVTGWRVNGVASQQEGNKRM
YHPEGIQTGEYWQKNGVAFKRIKLTNKKTAKEGSNNIVLNSMHKYHIQLV
IKQIGLDDQVLDTKKFEFKETEFIAVTAYQNDDVTQLKIDHNPFAKAFRD
NANEHCERSQYTDIYMTQPKRRKCQSYDEVTNQTTNHVMNDPILVDNSNN
NSNTTNEATFSLPLMNNENQSVTEEDKNRLLMNFNNDTSTSSTSYTNALT
NFSSFNCNSNDYNNSMNWFQPINFESHDIEEQSNLLSTQHTQSEQNLHSN
EVSTITNAFHPQKSPTHPSSESIDNEQKPRQTDIVIDLSKSYKSVM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034303XLOC_034303Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054433TCONS_00054433Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001699Transcription factor, T-boxPRINTSPR00937TBOXcoord: 271..284
score: 70.5
coord: 292..300
score: 84.3
coord: 134..158
score: 58.26
coord: 200..213
score: 32.45
coord: 217..226
score: 56.74
coord: 238..252
score: 48.26
IPR001699Transcription factor, T-boxSMARTSM00425tbox5coord: 116..305
e-value: 2.9E-68
score: 242.8
IPR001699Transcription factor, T-boxPFAMPF00907T-boxcoord: 120..300
e-value: 3.9E-59
score: 199.9
IPR001699Transcription factor, T-boxGENE3D2.60.40.820coord: 114..308
e-value: 5.4E-62
score: 208.4
IPR001699Transcription factor, T-boxPROSITEPS50252TBOX_3coord: 121..300
score: 57.159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 458..484
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..51
IPR018186Transcription factor, T-box, conserved sitePROSITEPS01283TBOX_1coord: 126..145
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 118..303

Blast
[Close]
BLAST of Tbx transcription factor vs. Swiss-Prot (Human)
Match: EOMES (Eomesodermin homolog OS=Homo sapiens GN=EOMES PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 4.497e-42
Identity = 91/192 (47.40%), Postives = 121/192 (63.02%), Query Frame = 0 
Query:  117 ARVWLDHQTLWRRFSVCGNEMIITKMGRRMFPVLSFGVHSLNFTDLYTMEVEVIPSDNNRYKYVSVTGWRVNGVASQ-QEGNKRMYHPEGIQTGEYWQKNGVAFKRIKLTNKKTAKEGSNN-IVLNSMHKYHIQLVIKQI---GLDD--QVLDTKKFEFKETEFIAVTAYQNDDVTQLKIDHNPFAKAFRDN 301
            A V+L ++ LW +F     EMIITK GRRMFP LSF ++ LN T  Y + VEV+ +D N +++     W   G A    +GNK   HPE   TG +W +  ++F ++KLTN K A   +   IVL S+HKY  +L I ++   G++D  +   T+ F F ET+FIAVTAYQN D+TQLKIDHNPFAK FRDN
Sbjct:  267 AHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQGGK-WVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDHNPFAKGFRDN 457
The following BLAST results are available for this feature:
BLAST of Tbx transcription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EOMES4.497e-4247.40Eomesodermin homolog OS=Homo sapiens GN=EOMES PE=1... [more]
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