TCONS_00054577-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054577-protein
Unique Name	TCONS_00054577-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	275

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054577-protein ID=TCONS_00054577-protein|Name=TCONS_00054577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
HFPEHAVLRKHPVPNPSMFETLTKSATSLGVELDITNGKSLQASLDGAVF
PDDPYKNVMLRILTTRCMTTALYFCSGTDKFDNFFHFGLAAPIYTHFTSP
IRRYPDVMVHRLLGVACGAYNSSAAFVDQEAAEKVTTHMNYRHKMAQHAG
RASVNLHTQIFFKNRVCDEEGYVMFVRKNALQVLIPKYGLEGTVYLSKKK
ESEGLFKFDEEALTQSFGDTTIHVFDKVIVQMSIEKKTIQSSEMQLKLVR
PKIPGLSVEPVDSKLDEPDSKRLKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034398	XLOC_034398	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054577	TCONS_00054577	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033770	RRP44_S1
IPR022966	RNase_II/R_CS
IPR012340	NA-bd_OB-fold

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033770	Exosome complex exonuclease RRP44, S1 domain	PFAM	PF17215	Rrp44_S1	coord: 168..241 e-value: 1.1E-12 score: 47.6
None	No IPR available	PFAM	PF00773	RNB	coord: 2..113 e-value: 4.0E-22 score: 78.9
IPR022966	Ribonuclease II/R, conserved site	PROSITE	PS01175	RIBONUCLEASE_II	coord: 86..110
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..164
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 168..241

Blast

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BLAST of TCONS_00054577-protein vs. Swiss-Prot (Human)
Match: RRP44 (Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 1.063e-86
Identity = 135/266 (50.75%), Postives = 180/266 (67.67%), Query Frame = 0

Query:    2 FPEHAVLRKHPVPNPSMFETLTKSATSLGVELDITNGKSLQASLDGAVFPDDPYKNVMLRILTTRCMTTALYFCSGTDKFDNFFHFGLAAPIYTHFTSPIRRYPDVMVHRLLGVACGAYNSSAAFVDQEAAEKVTTHMNYRHKMAQHAGRASVNLHTQIFFKNR-VCDEEGYVMFVRKNALQVLIPKYGLEGTVYLSKKKESEGLFKFDEEALTQSFGDTTIHVFDKVIVQMSIEKKTIQSSEMQLKLVRPKIPGLSVEPVDSKLD 266
            F EHA+LRKHP P PS +E L K+A S  +E+     KSL  SLD A  P  PY N +LRIL TRCM  A+YFCSG D  ++F H+GLA+PIYTHFTSPIRRY DV+VHRLL VA GA  +     D+     +  ++N+RHKMAQ+A RASV  HTQ+FFK++ +  EE Y++FVRKNA+ VLIPKYGLEGTV+  +K +      +D+E  +    DT  HVFDKV V++ ++   +Q  ++++ LV P+IPG+S+    S +D
Sbjct:  682 FSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFCSGMD--NDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKVKVKIMLDSSNLQHQKIRMSLVEPQIPGISIPTDTSNMD 945

The following BLAST results are available for this feature:

BLAST of TCONS_00054577-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054577-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RRP44	1.063e-86	50.75	Exosome complex exonuclease RRP44 OS=Homo sapiens ...	[more]

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TCONS_00054577-protein (polypeptide) - C. hemisphaerica