TCONS_00054590-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054590-protein
Unique NameTCONS_00054590-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054590-protein ID=TCONS_00054590-protein|Name=TCONS_00054590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MYLPFFVHLVENPKESMALTAAQLLDELMGRDRNLVPGEKSSQVPWDHED
VCRSFLCGFCPHDLFVNTKADLGTCTKIHDDQLKSDYEKSSRYGKMGFEE
DFTRYLGSIQGDVDRRIRRGHERLLINQAREQELSEKDSEKTKMLTDHIN
KLLEEIEQLGSEGKVEEAQGVARLVEQLKEEREQSKQNHSGVASQEKQME
VCEVCGAFLIVGDAQSRVDDHLQGKQHVGYAKIKSTLDEMKNRSWERRGR
EKSEKSDRDRDERDSERSKRRERSGERKSSRRSRSKSRDRRRDKSRERRR
SRDKRDERRSRHGSRDRDRDRSRRDSRRSSRRSRSRSKDRRRRSRSRERS
KDRRSRHGSRDRDRRERKSSKEKERRTEDKMDKGTAMVDSTEQNGTEERR
LNEGEEKQVSAXPDQGFIRITVC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034405XLOC_034405Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054590TCONS_00054590Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004882Luc7-rel
Vocabulary: Cellular Component
TermDefinition
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0006376mRNA splice site selection
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006376 mRNA splice site selection
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0003729 mRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 149..195
IPR004882Luc7-relatedPFAMPF03194LUC7coord: 21..256
e-value: 1.1E-87
score: 293.8

Blast
[Close]
BLAST of TCONS_00054590-protein vs. Swiss-Prot (Human)
Match: LC7L3 (Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 4.013e-104
Identity = 152/248 (61.29%), Postives = 194/248 (78.23%), Query Frame = 0 
Query:   19 LTAAQLLDELMGRDRNLVPGEKSSQVPWDHEDVCRSFLCGFCPHDLFVNTKADLGTCTKIHDDQLKSDYEKSSRYGKMGFEEDFTRYLGSIQGDVDRRIRRGHERLLINQAREQELSE----KDSEKTKMLTDHINKLLEEIEQLGSEGKVEEAQGVARLVEQLKEEREQSKQNHSGV---ASQEKQMEVCEVCGAFLIVGDAQSRVDDHLQGKQHVGYAKIKSTLDEMKNRSWERRGREKSEKSDRD 259
            ++AAQLLDELMGRDRNL P EK S V WDHE VC+ +LCGFCP +LF NT++DLG C KIHD+ L+  YEKSSR+ K+G+E DF RYL S+  +V+RRIRRGH RL ++Q ++   +     K+ EK ++LTD I+ LL++IE+LGSEGKVEEAQG+ +LVEQLKEERE  +   S +   A+QEKQMEVCEVCGAFLIVGDAQSRVDDHL GKQH+GYAKIK+T++E+K +      R+++E+ DRD
Sbjct:    2 ISAAQLLDELMGRDRNLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKL-----RKRTEEPDRD 244
The following BLAST results are available for this feature:
BLAST of TCONS_00054590-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LC7L34.013e-10461.29Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1... [more]
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