TCONS_00054604-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054604-protein
Unique NameTCONS_00054604-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length104

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054604-protein ID=TCONS_00054604-protein|Name=TCONS_00054604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSTVNSKKTKYQGSKRMFGQFRCPKCNRTWASGNTWANTAQQCQSCLIDV
FPYHQQRLERPSVLTGPGKEHPQHLWGMCKRLGRYCRDQDDYKDLTNYFG
GLRI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034411XLOC_034411Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054604TCONS_00054604Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027377Znf-3CxxC
IPR033446Zcchc24_zf-3CxxC
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027377Zinc-binding domainSMARTSM01328zf_3CxxC_2coord: 16..82
e-value: 2.3E-9
score: 47.1
IPR033446Zinc finger domain-containing protein 24, zinc-binding domainPFAMPF17180zf-3CxxC_2coord: 15..79
e-value: 6.3E-21
score: 74.8

Blast
[Close]
BLAST of TCONS_00054604-protein vs. Swiss-Prot (Human)
Match: ZCH24 (Zinc finger CCHC domain-containing protein 24 OS=Homo sapiens GN=ZCCHC24 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.009e-26
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0 
Query:    9 TKYQGSKRMFGQFRCPKCNRTWASGNTWANTAQQCQSCLIDVFPYHQQRLERPSVL--TGPGKEHPQHLWGMCKRLGRYCR 87
            T YQG KR FG+++CPKC R W SGN+WAN  Q+C  C I+V+P+ Q+ LE+P  L  +   KEHPQHL   CK LG YCR
Sbjct:  158 TPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCR 238
The following BLAST results are available for this feature:
BLAST of TCONS_00054604-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCH242.009e-2655.56Zinc finger CCHC domain-containing protein 24 OS=H... [more]
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