TCONS_00054610-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054610-protein
Unique NameTCONS_00054610-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054610-protein ID=TCONS_00054610-protein|Name=TCONS_00054610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MSIQIFQDSENIPGLGKKNKRGDENGMKTNIPKPTKRVALGNITNQVHGH
GSRIQPSRAAKDKHKANYHGTKSDESKVFENKPKRTNKLSTLKDSPMILS
LTPCTTESFEDIDTDEVLPNILNIDQNTDSDFDVPEYAQDIHNYLKKAEM
KFLPKRNYMEKQVDINKSMRSVLIDWLVEVAEEYKLNPQTLFLTVNYIDR
FLSCMSVLRGKLQLVGTACMLVASKFEEIYPPEVSEFVYITDDTYTAKQV
LRMESLVLKTLQFDVSVPTCKDFLNRYLLAAGAAEESQLRYLSQYLTELS
LVNTDICLTYRPSTIAAASVLVANNTLKLESWTPTLQHYSGYTTFELKNC
ATDIRRFFANAPNLQQQAVQQKYKAPKFGCVSQLSPPQTLVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034413XLOC_034413Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054610TCONS_00054610Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR004367Cyclin_C-dom
IPR006671Cyclin_N
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 272..356
e-value: 9.2E-15
score: 65.0
coord: 175..259
e-value: 1.0E-28
score: 111.4
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 154..259
e-value: 5.2E-38
score: 128.9
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 260..391
e-value: 1.5E-35
score: 121.8
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 130..265
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 267..389
IPR004367Cyclin, C-terminal domainSMARTSM01332Cyclin_C_2coord: 268..387
e-value: 2.6E-37
score: 139.9
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 268..386
e-value: 1.6E-33
score: 115.2
NoneNo IPR availablePIRSFPIRSF001771Cyclin_A_B_D_Ecoord: 7..392
e-value: 2.1E-115
score: 384.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..79
NoneNo IPR availableCDDcd00043CYCLINcoord: 266..354
e-value: 3.7684E-13
score: 63.7968
NoneNo IPR availableCDDcd00043CYCLINcoord: 169..258
e-value: 3.96685E-25
score: 96.5388
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 140..265
e-value: 1.1E-48
score: 164.1
IPR006671Cyclin, N-terminalPROSITEPS00292CYCLINScoord: 170..201

Blast
[Close]
BLAST of TCONS_00054610-protein vs. Swiss-Prot (Human)
Match: CCNA2 (Cyclin-A2 OS=Homo sapiens GN=CCNA2 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.056e-95
Identity = 154/285 (54.04%), Postives = 197/285 (69.12%), Query Frame = 0 
Query:  108 SFEDIDTDEVLPNILNIDQNTDSDFDVPEYAQDIHNYLKKAEMKFLPKRNYMEKQVDINKSMRSVLIDWLVEVAEEYKLNPQTLFLTVNYIDRFLSCMSVLRGKLQLVGTACMLVASKFEEIYPPEVSEFVYITDDTYTAKQVLRMESLVLKTLQFDVSVPTCKDFLNRYLLAAGAAEESQLRYLSQYLTELSLVNTDICLTYRPSTIAAASVLVANNTLKLESWTPTLQHYSGYTTFELKNCATDIRRFFANAPNLQQQAVQQKYKAPKFGCVSQLSPPQTLVL 392
            SFE   T ++  +I+  D+   S  +VP+Y +DIH YL++ E+K  PK  YM+KQ DI  SMR++L+DWLVEV EEYKL  +TL L VNYIDRFLS MSVLRGKLQLVGTA ML+ASKFEEIYPPEV+EFVYITDDTYT KQVLRME LVLK L FD++ PT   FL +Y L    A   ++  L+ +L ELSL++ D  L Y PS IA A+  +A  T+  +SW  +L   +GYT   LK C  D+ + +  AP   QQ++++KYK  K+  VS L+PP+TL L
Sbjct:  151 SFESPHTMDM--SIILEDEKPVSVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNL 432
The following BLAST results are available for this feature:
BLAST of TCONS_00054610-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNA21.056e-9554.04Cyclin-A2 OS=Homo sapiens GN=CCNA2 PE=1 SV=2[more]
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