TCONS_00054806-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054806-protein
Unique NameTCONS_00054806-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054806-protein ID=TCONS_00054806-protein|Name=TCONS_00054806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MPQFFMKSTQKGKKRKPVTKPSIKPKVKVHDKVDFDDDDIASSGKEESDY
ESESDHETAQSKRLRLAKEYIKQLENEEIDTKEADEIDKDAIAHRLQQDV
LEDAGQLQKFIADSITPDQENIIHMRGHKFSVTCVVISSDNKFVFSASKD
GSIIKWDITTHKKLLKIDGVSKKSKSGQKGHKGQIYTIAISSDVKFLATG
GQDMLINIWNGADLSWQHTFRGHRNIVTSLAFQKKQHQLFSASHDKTIKV
WNLNEMAYVETLYGHEDAVLGIDSLSRDHAVSCGGRDRSVRLWKIADESQ
LIFHSSNISSSFDCVTMLNEDYFLAGGDDGSLSIFNVRKKKPVTLRTNAH
VKGENSPPGGCDESWVSSVASLPYTDLVATAGSCDGCIKLWRCEKSFKSL
MPVHTIKVNGFVNGLKFSTGGEYLIAAIGQEHRLGRWWQMRNVKNTVCII
PLKNVNTNGVEEDT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034525XLOC_034525Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054806TCONS_00054806Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 144..158
score: 36.03
coord: 281..295
score: 28.65
coord: 239..253
score: 39.61
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 118..157
e-value: 2.1E-6
score: 37.3
coord: 348..392
e-value: 1.9
score: 15.2
coord: 213..252
e-value: 1.2E-7
score: 41.4
coord: 171..210
e-value: 8.7E-5
score: 31.9
coord: 399..438
e-value: 130.0
score: 3.8
coord: 298..336
e-value: 30.0
score: 7.7
coord: 255..294
e-value: 0.015
score: 24.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 364..391
e-value: 0.012
score: 16.4
coord: 179..210
e-value: 0.0025
score: 18.5
coord: 260..294
e-value: 0.0059
score: 17.3
coord: 217..252
e-value: 2.3E-7
score: 31.3
coord: 120..157
e-value: 2.9E-6
score: 27.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 178..210
score: 12.38
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 220..261
score: 15.354
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 125..166
score: 13.316
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 262..303
score: 10.375
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 34..457
e-value: 2.1E-73
score: 246.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableCDDcd00200WD40coord: 126..427
e-value: 9.47725E-46
score: 160.964
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 197..211
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 239..253
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 125..345
score: 38.599
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 121..437

Blast
[Close]
BLAST of TCONS_00054806-protein vs. Swiss-Prot (Human)
Match: U3IP2 (U3 small nucleolar RNA-interacting protein 2 OS=Homo sapiens GN=RRP9 PE=1 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 4.288e-133
Identity = 187/400 (46.75%), Postives = 279/400 (69.75%), Query Frame = 0 
Query:   58 TAQSKRLRLAKEYIKQLENEEIDTKEADEIDKDAIAHRLQQDVLEDAGQLQKFIADSI-TPDQENIIHMRGHKFSVTCVVISSDNKFVFSASKDGSIIKWDITTHKKLLKIDGVSKKSKSGQKGHKGQIYTIAISSDVKFLATGGQDMLINIWNGADLSWQHTFRGHRNIVTSLAFQKKQHQLFSASHDKTIKVWNLNEMAYVETLYGHEDAVLGIDSLSRDHAVSCGGRDRSVRLWKIADESQLIFHSSNISSSFDCVTMLNEDYFLAGGDDGSLSIFNVRKKKPVTLRTNAH-VKGENSPPGGCDESWVSSVASLPYTDLVATAGSCDGCIKLWRCEKSFKSLMPVHTIKVNGFVNGLKFSTGGEYLIAAIGQEHRLGRWWQMRNVKNTVCIIPLKNV 455
            TAQ K+LRLAK Y++QL  +E +  EA   ++D +A RL++DVLE  G+LQK +A  I  P   +I  +RGH+ S+TC+V++ D+  +FSA+KD SIIKW + + +KL  I    K ++    GH   +  +AISSD K+LA+G +  LI IW        +TF GHR+ V+ LAF++  HQL+S SHD+++KVWN+ E +YVETL+GH+DAV  +D+LSR+  V+ GGRD +VR+WKI +ESQL+F+      S DC+ ++NE++ ++G DDGS++++ + KK+P+ L+  AH ++GE   PG     W+SSVA+L  TDLVAT GS   C++LW+C + F+ L  +  I + GF+N LKFS+ G++L+A +GQEHRLGRWW+++  +N+VCIIPL+ V
Sbjct:   74 TAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQ--GSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGE---PGLEQPFWISSVAALLNTDLVAT-GSHSSCVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRV 467
The following BLAST results are available for this feature:
BLAST of TCONS_00054806-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U3IP24.288e-13346.75U3 small nucleolar RNA-interacting protein 2 OS=Ho... [more]
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