TCONS_00054808-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054808-protein
Unique NameTCONS_00054808-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length172

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054808-protein ID=TCONS_00054808-protein|Name=TCONS_00054808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MGKKDPNKPKGAKSAYTYFTETIREERKANGEPYDIATVSKEASEQWKTM
DEDDREPYVKQAEKDKKRYQKEMESYIPPSDSDSDSDAPKKKKKKKDPNA
PKRNQSAYFLFSNKNREKIKGELGEGCKITEIASALGAKWRGMNDKDKAP
YAELAVKDKERYQKEMAEYNGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034527XLOC_034527Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054808TCONS_00054808Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 135..154
score: 35.56
coord: 154..172
score: 38.1
coord: 38..60
score: 32.85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..111
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 101..167
e-value: 1.7758E-14
score: 63.8009
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 9..74
e-value: 1.301E-13
score: 61.1045
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 8..78
e-value: 2.5E-15
score: 66.9
coord: 100..171
e-value: 1.0E-20
score: 84.8
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 1..90
e-value: 4.6E-19
score: 68.1
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 91..171
e-value: 4.3E-25
score: 87.3
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 101..170
e-value: 2.1E-20
score: 72.8
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 6..76
e-value: 1.8E-18
score: 66.8
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 9..77
score: 16.203
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 101..170
score: 18.311
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 2..79
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 91..170

Blast
[Close]
BLAST of TCONS_00054808-protein vs. Swiss-Prot (Human)
Match: HMGB1 (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.237e-34
Identity = 75/174 (43.10%), Postives = 102/174 (58.62%), Query Frame = 0 
Query:    1 MGKKDPNKPKGAKSAYTYFTETIREERKANG--EPYDIATVSKEASEQWKTMDEDDREPYVKQAEKDKKRYQKEMESYIPPSDSDSDSDAPKKKKKKKDPNAPKRNQSAYFLFSNKNREKIKGELGEGCKITEIASALGAKWRGMNDKDKAPYAELAVKDKERYQKEMAEYNGR 172
            MGK DP KP+G  S+Y +F +T REE K        + +  SK+ SE+WKTM   ++  +   A+ DK RY++EM++YIPP            KKK KDPNAPKR  SA+FLF ++ R KIKGE   G  I ++A  LG  W      DK PY + A K KE+Y+K++A Y  +
Sbjct:    1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--------KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH-PGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
The following BLAST results are available for this feature:
BLAST of TCONS_00054808-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMGB11.237e-3443.10High mobility group protein B1 OS=Homo sapiens GN=... [more]
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