|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00054813-protein ID=TCONS_00054813-protein|Name=TCONS_00054813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1877bp
MATPPIAKSYTHGTLEEQELKDKVMMDLTDNTKKNVARILFEDPANKELE
PSMCLLLDDSCKDSDRNDGPQSPTLFNASEIPSCGNSYEMSPPITAQKPK
RIQKNPMLEHSLGVSLFDSPPRTNNKRKSSSTSTLDETGCDLFGSPPVVS
FIKYPLQTISKFPKSPLKNHDEENNEDDVFLSPSIASINIDPKKKMIPKM
TQSTPIVSKSTKTRVNVPPESMLKLSIDIKTDCLPKKSVELSPSMIDWNN
SSLRLSKTNLHNFTEEGEENDLDLSPSVIQPSKSTNTTTVSKHQEGGKST
NDIHTTLEKSSFNLSNLPLHFEVEVDKSKSFFYPKASTTNSKCLDSISVI
NNDPLPREKTVTKRNARQYCQNASKVKKDQSSFIDMDELSQLPFHLIESQ
PLNIKEERKMISSKVSLLNELKNNNDDSNEKIDTEVNTNVAKDENRPAPF
TGFQTAKGKSAIISESALEEVKRKFEDVEKTEHPKININTNIKTPFVGFQ
TAEGKHVHISESALKAAKHKFESEDLNNNISTPFTGFKTAKGSVVKISES
ALKAAKQKFDSDEDNNKNNIPAKTPFTGFQTANGNAVKICESSLKAAKAK
FEPDIKIDSEQFTGFQTANGQNVPISNDALKAAKQKFDLIETSNPNSGFQ
TAKGNVVKISEHALNSAKRKFSQNDISNPDCPVSTHGFTGFQTAQGKTVK
ISESALKAAKQKFESEDSKISTNLSSTTPFMGFQTAKGTTVKISETALKA
AKQKFESDEVDHKINISTTTPFAGFQTAKGSTVKISESALKAAKQKFDSD
EDTNSTSPSTITPFTGFQTAKGSAVKISESALKAAKQKFNSEEVNHTSNI
STATPFAGFQTAKGSRVKITESALKAAKQKFNSEEVNHANNISTATPFAG
FQTAKGSAVKISESALKAAKQKFDSDEVSNSTSHPSTITPFTGFQTAEGK
TVSISEESIKAAQSKFDADETSSLSKFTTPGFSLNAHSKYLNMEAPKAKR
KIHYTTPDQYQFDRAVTMTRPLSPAVARYSTKQKDKSRSEQKPSNAQNLN
NSFMTPFKSLKRSCSAKESQPKVENKKRKKNLFSYKPLFVNTIAEVKEEG
MQFDDDPKDEHIRKSRFNVDGIYQSKKKTKSSFPEFVNYCSPSVYSRKEL
QEYGLQDSVINLSGDSALDFTFDAKKYFSLQVAISGKLALCCGFQIVINE
KVEIGLNEIKSAFMKSNDIDKSLVPERWIENHFKWIVWKLAAYERRFPGQ
FANKCLTPFIVMEQLRYRYDKELEKAERSCLKKIYERDDISTRRMILFVS
DILHAVSNNDQKCKTVIKLSDGWYEIKAGLDQPLSAFLDHKKIAIGTKLC
VYGAELIGSTQACPPLQAPEDLMLMLSANSTRRASWDTKLGFQPIKQAFA
VPLTSLYSDGGSVGCVNITILRKYPTQWMQKEGGRCIFRNLQQEEEAKKK
YEEQKQKKMETLYASIQKEFEETTNKGTKRKRRSLSMKEIGELKDGRDIY
NAIQNSIDPSTVECYLSDSQKEAVFKHKQKKQTLEQDKLRRTFQNQWQNI
VEEEFPDRSVVHLQRYRICECPTLNSKSRPFKDAILTVWKPTEDINENFK
EGVNLKLFNLNTSASRYKQTSCNFQLSTTNTTKYRLIEDDLCAENIDYIP
RQATPIDELYTKSHVPCNEIDVVAYVLSVERQKSTEEVMYLYDGGERFLA
VKVWNNPQNVKNKLEGCVIAATNLSWQKFATPSRNRIIHVQFTDFSNFSK
NPKAEHLRKAMNKYQSSLTQRAIQVARSNLQQQLQTNSSIKKLPPISSIE
TTNNNTITVKKTISSDSKREQSFCDDLPSEKLLSRQKLQMKKRLSLDRYH
NPPGLSPLQTRENGVLKSQFKPPSTLS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000724 | double-strand break repair via homologous recombination |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000724 |
double-strand break repair via homologous recombination |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 418..438 |
| None | No IPR available | COILS | Coil | Coil | coord: 1441..1461 |
| None | No IPR available | GENE3D | 2.40.50.140 | | coord: 1657..1787
e-value: 4.1E-20
score: 71.4 |
| None | No IPR available | GENE3D | 2.40.50.140 | | coord: 1278..1395
e-value: 6.6E-39
score: 132.2 |
| None | No IPR available | GENE3D | 2.40.50.140 | | coord: 1397..1650
e-value: 1.8E-23
score: 82.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 64..94 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 113..139 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 266..303 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1024..1052 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1843..1877 |
| None | No IPR available | CDD | cd04493 | BRCA2DBD_OB1 | coord: 1293..1392
e-value: 2.95814E-34
score: 128.113 |
| None | No IPR available | SUPERFAMILY | 81878 | BRCA2 tower domain | coord: 1431..1560 |
| IPR015205 | Tower domain | SMART | SM01341 | Tower_2 | coord: 1430..1469
e-value: 2.2E-5
score: 33.9 |
| IPR015205 | Tower domain | PFAM | PF09121 | Tower | coord: 1432..1469
e-value: 3.0E-8
score: 33.6 |
| IPR015188 | BRCA2, oligonucleotide/oligosaccharide-binding 3 | PFAM | PF09104 | BRCA-2_OB3 | coord: 1651..1777
e-value: 7.3E-19
score: 67.7 |
| IPR002093 | BRCA2 repeat | PFAM | PF00634 | BRCA2 | coord: 688..711
e-value: 6.0E-5
score: 22.3
coord: 450..477
e-value: 2.6E-4
score: 20.3
coord: 940..960
e-value: 3.6E-5
score: 23.0
coord: 494..518
e-value: 3.2E-5
score: 23.2
coord: 644..672
e-value: 7.6E-5
score: 22.0 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 608..642
score: 10.313 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 684..718
score: 11.195 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 572..606
score: 8.815 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 894..928
score: 9.943 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 768..802
score: 10.525 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 530..564
score: 10.402 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 937..971
score: 10.331 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 492..526
score: 10.278 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 852..886
score: 9.979 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 726..760
score: 9.749 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 446..480
score: 11.459 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 642..676
score: 9.732 |
| IPR002093 | BRCA2 repeat | PROSITE | PS50138 | BRCA2_REPEAT | coord: 810..844
score: 9.555 |
| IPR015252 | Breast cancer type 2 susceptibility protein, helical domain | PFAM | PF09169 | BRCA-2_helical | coord: 1116..1275
e-value: 5.3E-40
score: 137.0 |
| IPR015252 | Breast cancer type 2 susceptibility protein, helical domain | SUPERFAMILY | 81872 | BRCA2 helical domain | coord: 1124..1276 |
| IPR015187 | BRCA2, oligonucleotide/oligosaccharide-binding 1 | PFAM | PF09103 | BRCA-2_OB1 | coord: 1279..1393
e-value: 5.5E-37
score: 126.3 |
| IPR012340 | Nucleic acid-binding, OB-fold | SUPERFAMILY | 50249 | Nucleic acid-binding proteins | coord: 1656..1785 |
| IPR012340 | Nucleic acid-binding, OB-fold | SUPERFAMILY | 50249 | Nucleic acid-binding proteins | coord: 1278..1394 |
| IPR012340 | Nucleic acid-binding, OB-fold | SUPERFAMILY | 50249 | Nucleic acid-binding proteins | coord: 1401..1429
coord: 1563..1644 |
Blast
BLAST of TCONS_00054813-protein vs. Swiss-Prot (Human)
Match: BRCA2 (Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2 PE=1 SV=3) HSP 1 Score: 412.92 bits (1060), Expect = 1.066e-116 Identity = 241/652 (36.96%), Postives = 382/652 (58.59%), Query Frame = 0
Query: 1142 PSVYSRKELQEYGLQDSVINLSGDSALDFTFDAKKYFSLQVAISGK-LALCCGFQIVINEKVEIGLNEIKSAFMKSNDIDKSLVPERWIENHFKWIVWKLAAYERRFPGQFANKCLTPFIVMEQLRYRYDKELEKAERSCLKKIYERDDISTRRMILFVSDIL-----------HAVSNNDQKCKTVIKLSDGWYEIKAGLDQPLSAFLDHKKIAIGTKLCVYGAELIGSTQACPPLQAPEDLMLMLSANSTRRASWDTKLGFQPIKQAFAVPLTSLYSDGGSVGCVNITILRKYPTQWMQK-EGGRCIFRNLQQEEEAKKKYEEQKQKKMETLYASIQKEFEETTNKGTK--RKRRSLSMKEIGELKDGRDIYNAIQNSIDPSTVECYLSDSQKEAVFKHKQ----KKQTLEQDKLRRTFQNQWQNIVEEEFPDRSVVHLQRYRICECPTLNSKSRPFKDA-ILTVWKPTEDINENFKEGVNLKLFNLNTSASRYKQTSCNFQLSTTNTTKYRL--IEDDLCAENIDYIPRQATPIDELYTKSHVP-CNEIDVVAYVLSVERQKSTEEVMYLYDGGERFLAVKVWN--NPQNVKNKLEGCVIAATNLSWQKFATPSRNRIIHVQFTDFSNFSKNPKAEHLRKAMNKYQSSL 1768
PS S K+L YG+ I ++ +A F F + YF + +GK + L G ++ + + G E A + +D L+ W+ NH++WI+WKLAA E FP +FAN+CL+P V+ QL+YRYD E++++ RS +KKI ERDD + + ++L VSDI+ + S+ D + +I+L+DGWY +KA LD PL A L + ++ +G K+ ++GAEL+GS AC PL+APE LML +SANSTR A W TKLGF P + F +PL+SL+SDGG+VGCV++ I R YP QWM+K G IFRN ++EE+ KY E +QK++E L+ IQ+EFEE TK R+L+ +++ L+DG ++Y A++N+ DP+ +E Y S+ Q A+ H+Q KKQ Q ++R+ ++ Q +E+ R V + + RI S S+ KD+ IL++W+P+ D+ EG ++++L TS S+ K N QL+ T T+Y+ + D++ + Y PR+ + P C+E+D++ +V+SV ++ +YL D LA+K W N +K + +IAA+NL W+ S++ ++ + DFS FS +PK H ++ NK ++++
Sbjct: 2532 PSACSHKQLYTYGVSKHCIKINSKNAESFQFHTEDYFGKESLWTGKGIQLADGGWLIPSNDGKAGKEEFYRALCDTPGVDPKLISRIWVYNHYRWIIWKLAAMECAFPKEFANRCLSPERVLLQLKYRYDTEIDRSRRSAIKKIMERDDTAAKTLVLCVSDIISLSANISETSSNKTSSADTQKVAIIELTDGWYAVKAQLDPPLLAVLKNGRLTVGQKIILHGAELVGSPDACTPLEAPESLMLKISANSTRPARWYTKLGFFPDPRPFPLPLSSLFSDGGNVGCVDVIIQRAYPIQWMEKTSSGLYIFRNEREEEKEAAKYVEAQQKRLEALFTKIQEEFEEHEENTTKPYLPSRALTRQQVRALQDGAELYEAVKNAADPAYLEGYFSEEQLRALNNHRQMLNDKKQAQIQLEIRKAMESAEQ---KEQGLSRDVTTVWKLRIV------SYSKKEKDSVILSIWRPSSDLYSLLTEGKRYRIYHLATSKSKSKSERANIQLAATKKTQYQQLPVSDEILFQ--IYQPREPLHFSKFLDPDFQPSCSEVDLIGFVVSVVKKTGLAPFVYLSDECYNLLAIKFWIDLNEDIIKPHM---LIAASNLQWR---PESKSGLLTLFAGDFSVFSASPKEGHFQETFNKMKNTV 3166
The following BLAST results are available for this feature:
|
