TCONS_00054824-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054824-protein
Unique Name	TCONS_00054824-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1105

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054824-protein ID=TCONS_00054824-protein|Name=TCONS_00054824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1105bp
MIGFSTGYLVVISTHLKEIGQELFQTRDHKDELTDIDISLSLKMAASCGD
GCIKLHDLNDLKEIQAIINVEDIGRAKLDKVQWTEDGQLLAVTTTQGAVH
VYLTKLPILGASYETKVAYLTSLREITITDEVANTSPIKIPTQVEPNFIA
LYQDNLACGMNNRVWFCKLAEFNGTPFHDREYLGTVNQVRLNKDYAAVGF
EGRAQLHLIQGDLGENSEEEREGRLFPDEGDKSKITSFTLTGDFFIYSNE
GGHIKFFYLEDWQYVNEYRHVVGIRKIFPDEAGTKVIYIDDKSDGFIYCT
VSDGVHEIQSFPPAVKGVLWDQGFLDENVFCVYDEDKLYLYSYSKDTVAG
TDCALACSAKLSFGYSPVMMHNGRVTCQTQAGKLMSVELIPNNVSDVHDS
TKAKNNLKNMLTLKRFKEAWTICEKLKTPEHWEMLAEVATRQLDINFAIR
VYRHIGNVSMVIYLEKLKKMEDKNLLAGYVAMTLKDFNLAQDLFLLSGRP
QAALEMRRDLLHWDQALELAKALAPEEMPFISKEYAQQLEFTGDYPNALL
HFENGITNESDFKDHDEICTGGVARMAIRMGDIRRGVNLASKSSSKALKK
ECASLLENMKQYNESAILYEKSQSWDKAASVYIKLKQWNKVGELLKYITT
PKLLMQYAKAKEHDGKYKEAATAYKKAKDYESVIRINLDHLQNPEEAVNL
VKETQSVEGARMVAKFFQDLGDFASAIQFLVMSKCADEAFKIAQQYDQME
QYAEIIGDQATQEDNNSIAVYFENKRKYLLAGKFFMFAGQYQKALSHLLR
CPVTENGESVELSIQTVKKANDEKLIMHLIDFLMGELDGMPKDSKYLFRL
YMAIEKFTEAAKTAIIIAQSEQEMGNYRNAHDVLFSMYKELRERKIKIPN
EMNQNLMLLHSYIVCKIHIKRGDHLKGARMLIRVANNISKFPAHIVPILT
STVVECHRAGLKHSSFSFAAMLMRPEYRSQIDVKYKKKIEMIVRKPDKTE
EEEPLDACPFCSYPVPQTQLDCPECKQHLPYCVVTGRHMLKDDWCNCPNC
SFPALSSEFKNLLEGEETKCPMCAEKVTINSLKPVPDPSIYLRDEVAVPA
VPDEL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034537	XLOC_034537	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054824	TCONS_00054824	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR011990	TPR-like_helical_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 595..615
None	No IPR available	PFAM	PF15911	WD40_3	coord: 265..321 e-value: 1.0E-23 score: 83.0
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 129..374 e-value: 2.7E-4 score: 19.6
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 1..126 e-value: 8.3E-8 score: 30.9
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 593..1011 e-value: 4.3E-16 score: 58.5
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 375..592 e-value: 0.023 score: 13.9
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 527..564 coord: 609..680
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 21..347

Blast

[Close]

BLAST of TCONS_00054824-protein vs. Swiss-Prot (Human)
Match: WDR19 (WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2)

HSP 1 Score: 1336.63 bits (3458), Expect = 0.000e+0
Identity = 634/1099 (57.69%), Postives = 829/1099 (75.43%), Query Frame = 0

Query:    1 MIGFSTGYLVVISTHLKEIGQELFQTRDHKDELTDIDISLSLKMAASCGDGCIKLHDLNDLKEIQAIINVEDIGRAKLDKVQWTEDGQLLAVTTTQGAVHVYLTKLPILGASYETKVAYLTSLREITITDEVANTSPIKIPTQVEPNFIALYQDNLACGMNNRVWFCKLAEFNGTPFHDREYLGTVNQVRLNKDYAAVGFEGRAQLHLIQGDLGENSEEEREGRLFPDEGDKSKITSFTLTGDFFIYSNEGGHIKFFYLEDWQYVNEYRHVVGIRKIFPDEAGTKVIYIDDKSDGFIYCTVSDGVHEIQSFPPAVKGVLWDQGFLDENVFCVYDEDKLYLYSYSKDTVAGTDCALACSAKLSFGYSPVMMHNGRVTCQTQAGKLMSVELIPNN-VSDVHDST--KAKNNLKNMLTLKRFKEAWTICEKLKTPEHWEMLAEVATRQLDINFAIRVYRHIGNVSMVIYLEKLKKMEDKNLLAGYVAMTLKDFNLAQDLFLLSGRPQAALEMRRDLLHWDQALELAKALAPEEMPFISKEYAQQLEFTGDYPNALLHFENGITNESDFKDHDEICTGGVARMAIRMGDIRRGVNLASKSSSKALKKECASLLENMKQYNESAILYEKSQSWDKAASVYIKLKQWNKVGELLKYITTPKLLMQYAKAKEHDGKYKEAATAYKKAKDYESVIRINLDHLQNPEEAVNLVKETQSVEGARMVAKFFQDLGDFASAIQFLVMSKCADEAFKIAQQYDQMEQYAEIIGDQ-ATQEDNNSIAVYFENKRKYLLAGKFFMFAGQYQKALSHLLRCPVTENGESVELSIQTVKKANDEKLIMHLIDFLMGELDGMPKDSKYLFRLYMAIEKFTEAAKTAIIIAQSEQEMGNYRNAHDVLFSMYKELRERKIKIPNEMNQNLMLLHSYIVCKIHIKRGDHLKGARMLIRVANNISKFPAHIVPILTSTVVECHRAGLKHSSFSFAAMLMRPEYRSQIDVKYKKKIEMIVRKPDKTEEEEPLDACPFCSYPVPQTQLDCPECKQHLPYCVVTGRHMLKDDWCNCPNCSFPALSSEFKNLLEGEETKCPMCAEKVTINSLKPVPDPSIYLRDE 1095
            MIGFS G+ VVISTH  E+GQE+FQ R+HKD LT I +S +L   A+CGD CIK+ DL DLK++  I+N+++  +  L  + WT+DGQLLA++T +G++HV+LTKLPILG +  T++AYLTSL E+T+ + V    PI +   VEPNF+A+   +LA GMNNR WF  L E       D EYLGTV  + L+ DYAA  FEG+ QLHLI+ ++  +++EERE RLFP   DK +I    LT DF IY  + G +++FY+EDWQ+VN+YRH V ++KIFPD  GT++++ID+KSDGF+YC V+D  +EI  F P +KGVLW+   +D+ VF  YD+DK+Y Y + KDT+ G    LA S K+ F + P++++NG +TCQTQ+GK+ ++ L  +  +S++ D+   + +  L   L LKRF +AW +C  L     W  LA      +++ FAIRVYR IGNV +V+ LE++K +ED NLLAG++AM   D+NLAQDL+L S  P AALEMRRDL HWD AL+LAK LAP+++PFISKEYA QLEF GDY NAL H+E GIT   D K+HDE C  GVA+M+IRMGDIRRGVN A K  S+ LK++C ++LENMKQ++E+A LYEK   +DKAASVYI+ K W KVG+LL ++++PK+ +QYAKAKE DG+YKEA  AY+ AK ++SVIRI LDHL NPE+AVN+V+ETQS++GA+MVA+FF  LGD+ SAIQFLVMSKC +EAF +AQQ+++ME YA+IIG +  T ED  SIA+YFE +++YL AGKFF+  GQY +AL H L+CP +E+  ++E++I+TV +A DE L   LID L+GE DGMPKD+KYLFRLYMA++++ EAA+TAIIIA+ EQ  GNYRNAHDVLFSMY EL+ +KIKIP+EM  NLM+LHSYI+ KIH+K GDH+KGARMLIRVANNISKFP+HIVPILTSTV+ECHRAGLK+S+FSFAAMLMRPEYRS+ID KYKKKIE +VR+PD +E EE    CPFC + +P+ +L CP CK  +PYC+ TGRHMLKDDW  CP+C FPAL SE K +L  E T CPMC+E++    LK + D + YLR E
Sbjct:  246 MIGFSCGHFVVISTHTGELGQEIFQARNHKDNLTSIAVSQTLNKVATCGDNCIKIQDLVDLKDMYVILNLDEENKG-LGTLSWTDDGQLLALSTQRGSLHVFLTKLPILGDACSTRIAYLTSLLEVTVANPVEGELPITVSVDVEPNFVAVGLYHLAVGMNNRAWFYVLGENAVKKLKDMEYLGTVASICLHSDYAAALFEGKVQLHLIESEI-LDAQEERETRLFPAVDDKCRILCHALTSDFLIYGTDTGVVQYFYIEDWQFVNDYRHPVSVKKIFPDPNGTRLVFIDEKSDGFVYCPVNDATYEIPDFSPTIKGVLWENWPMDKGVFIAYDDDKVYTYVFHKDTIQGAKVILAGSTKVPFAHKPLLLYNGELTCQTQSGKVNNIYLSTHGFLSNLKDTGPDELRPMLAQNLMLKRFSDAWEMCRILNDEAAWNELARACLHHMEVEFAIRVYRRIGNVGIVMSLEQIKGIEDYNLLAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQHWDSALQLAKHLAPDQIPFISKEYAIQLEFAGDYVNALAHYEKGIT--GDNKEHDEACLAGVAQMSIRMGDIRRGVNQALKHPSRVLKRDCGAILENMKQFSEAAQLYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENAKQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNNEAFTLAQQHNKMEIYADIIGSEDTTNEDYQSIALYFEGEKRYLQAGKFFLLCGQYSRALKHFLKCPSSEDNVAIEMAIETVGQAKDELLTNQLIDHLLGENDGMPKDAKYLFRLYMALKQYREAAQTAIIIAREEQSAGNYRNAHDVLFSMYAELKSQKIKIPSEMATNLMILHSYILVKIHVKNGDHMKGARMLIRVANNISKFPSHIVPILTSTVIECHRAGLKNSAFSFAAMLMRPEYRSKIDAKYKKKIEGMVRRPDISEIEEATTPCPFCKFLLPECELLCPGCKNSIPYCIATGRHMLKDDWTVCPHCDFPALYSELKIMLNTEST-CPMCSERLNAAQLKKISDCTQYLRTE 1339

The following BLAST results are available for this feature:

BLAST of TCONS_00054824-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054824-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR19	0.000e+0	57.69	WD repeat-containing protein 19 OS=Homo sapiens GN...	[more]

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TCONS_00054824-protein (polypeptide) - C. hemisphaerica